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Re: [Jmol-users] Jmol/JSmol Doesn't read Unit Cell Info in PDB File?
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From: Robert H. <ha...@st...> - 2015-03-21 02:40:05
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This is fixed. See http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.13_2015.03.20b.zip Jmol.___JmolVersion="14.3.13_2015.03.20b" bug fix: PDB reader does not save unit cell on simple load bug fix: popup menu Symmetry does not enable so that it can display symmetry operations bug fix: use of {*}.xxxx = for(i;{*};....) fails On Fri, Mar 20, 2015 at 4:50 PM, Robert Hanson <ha...@st...> wrote: > Hmm. I will look into that. It does look like that was lost in Jmol 14.2 > > On Fri, Mar 20, 2015 at 3:09 PM, Pat Carroll <car...@sa...> > wrote: > >> Recently, I downloaded the latest version of Jmol/JSmol (14.2.13) in >> order to (finally) convert my webpages from java to javascript. Everything >> went smoothly except that any time a webpage had a PDB file to be read by >> Jmol/JSmol, the unit cell was not displayed. These PDB files DO have a >> CRYST1 line with the unit cell, but the “unitcell” instruction on the >> pop-up menu was “grayed out”. Previous versions of Jmol (12 & 13) do >> successfully read the unit cell from these same files. This also seems to >> be true of the PDB files on one of Bob H’s demo pages: >> >> >> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?_USE=JAVA >> >> >> Pat >> >> >> Patrick J. Carroll, Ph.D. >> Director, X-ray Crystallography Facility >> Department of Chemistry >> University of Pennsylvania >> Philadelphia, PA >> >> Phone: 215-898-3505 >> Web: http://crystal.chem.upenn.edu >> >> >> >> >> >> ------------------------------------------------------------------------------ >> Dive into the World of Parallel Programming The Go Parallel Website, >> sponsored >> by Intel and developed in partnership with Slashdot Media, is your hub >> for all >> things parallel software development, from weekly thought leadership >> blogs to >> news, videos, case studies, tutorials and more. Take a look and join the >> conversation now. http://goparallel.sourceforge.net/ >> _______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Department of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Department of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |