From: Robert H. <ha...@st...> - 2014-10-16 14:53:01
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Rolf, I'm not seeing the issue with http://chemapps.stolaf.edu/jmol/test/ibuprofen.gif This was from: load $ibuprofen background [x303030] color carbon black capture "ibuprofen" spin x What are we doing differently? Bob On Thu, Oct 16, 2014 at 9:11 AM, Brenton Horne <bre...@ym...> wrote: > NVM I've figured it out myself. > On 16/10/2014 11:48 PM, Brenton Horne wrote: > > Hi > > > > I'm not sure whom else to ask but I updated Java this morning, and for > > some reason Jmol isn't running anymore it's asking me which program to > > run it with. I went through my programs and selected a java application > > (.exe) in my program files and it opened a command prompt, this prompt > > closed soon after and no Jmol window opened. > > > > Thanks for your time, > > Brenton > > > > On 16/10/2014 11:11 PM, Rolf Huehne wrote: > >> On 10/16/2014 04:43 AM, Robert Hanson wrote: > >>> http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.8_2014.10.15.zip > >>> > >>> Definitely better. No more stray lines if the background is > transparent, > >>> which is what counts. > >>> > >>> Do give this a try, Rolf. > >>> > >> I tried it and here are the results in comparison: > >> capture: > >> > http://www.fli-leibniz.de/~rhuehne/jmol/bupropion-capture-antialias_off.gif > >> > >> PNGT->Gimp: > >> > http://www.fli-leibniz.de/~rhuehne/jmol/bupropion-movie-antialias_off.gif > >> > >> The Gimp movie still looks considerably better (smoother, less dotted) > >> than the improved Jmol movie. > >> > >> For 'capture' I used the following commands after setting the window > >> size to get the image resolution of 1362x617 pixel: > >> --------------------- > >> background yellow; > >> set antialiasImages off; > >> animation mode loop > >> animation fps 7 > >> ndegrees = 2 > >> nFrames = 180 > >> capture "bupropion-capture-antialias_off.gif" 1000 transparent; > >> for (var i = 1; i<= nFrames; i++) { > >> rotate x @ndegrees; > >> refresh; > >> } > >> capture; > >> -------------------- > >> > >> For PNGT export I used the following commands: > >> --------------------- > >> set antialiasImages off; > >> exportAnimation("bupropion-movie","1362", "617", "180", "rotate > >> axisangle {1 0 0} 2", "yellow") > >> --------------------- > >> And in Gimp I manually applied indexing to 255 colors using the > >> Floyd-Steinberg dithering option with reduced color bleeding. > >> During export as GIF I set the delay to 140ms and the disposal method to > >> 'one frame per layer (replace)'. > >> > >> Regards, > >> Rolf > > > > > ------------------------------------------------------------------------------ > > Comprehensive Server Monitoring with Site24x7. > > Monitor 10 servers for $9/Month. > > Get alerted through email, SMS, voice calls or mobile push notifications. > > Take corrective actions from your mobile device. > > http://p.sf.net/sfu/Zoho > > _______________________________________________ > > Jmol-users mailing list > > Jmo...@li... > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > > ------------------------------------------------------------------------------ > Comprehensive Server Monitoring with Site24x7. > Monitor 10 servers for $9/Month. > Get alerted through email, SMS, voice calls or mobile push notifications. > Take corrective actions from your mobile device. > http://p.sf.net/sfu/Zoho > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Department of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |