Re: [Jmol-users] Jmol/JSmol 13.1.15 and Jmol 13.0.15 released

[Frieda R. <fri...@ma...>]

Thanks for bringing this up, Bob. I'm actually very eager to switch to JSmol, but I felt I didn't have time to figure out how to use JSmol for my latest figure, which involves 5 applets and uses the sync command. I just wasn't 100% sure that everything I needed would be supported, and also I didn't want to mess with my template page for figures. Also, in general, I was not sure whether JSmol would spin large proteins smoothly.

However I just went to your test page to check it out and it seems like the rotation on 1hbo (hemoglobin) is pretty good. 

BTW, the mep isosurface command on that page locks up the page and Firefox gave me the following error message:

A script on this page may be busy, or it may have stopped responding. You can stop the script now, or you can continue to see if the script will complete.
Script: http://chemapps.stolaf.edu/jmol/jsmol/j2s/core/core.z.js:650

I have another figure coming up, possibly with multiple applets. I'll give JSmol a try.

Any links to pages with tips about how to switch over would be very appreciated.

Thanks again for your amazing work, Bob.



On Jun 20, 2013, at 11:32 AM, Robert Hanson wrote:

> I have uploaded a new http://chemapps.stolaf.edu/jmol/jsmol.zip 
> 
> Frieda, I was thinking. You said, "I'm not using JavaScript." And that is fine, but the real reason to use JSmol is not necessarily because you want an iPad-viewable model. The reason is that we have stopped developing with Jmol.js, and the JSmol "JavaScript Object" option is much better, even for Java, just in terms of how it fits into web pages and how you put together applets on the page. Not that you can't keep using Jmol.js....
> 
> Bob
> 
> 
> 
> 
> On Thu, Jun 20, 2013 at 10:28 AM, Frieda Reichsman <fri...@ma...> wrote:
> Thanks Angel, I had cleared browser cache and updated Java as well as restarting my machine. I had no idea that the Java cache was resistant to all of that... in fact, clearing the Java cache and browser cache again were necessary, and finally I can see my page in action. Whew!
> 
> 
> On Jun 20, 2013, at 11:14 AM, Angel Herráez wrote:
> 
> > Dear Frieda
> >
> > My first guess is that your browser's JVM is caching the old applet.
> > Try cleaning the Java cache.
> >
> > I just accessed your page
> > http://moleculesinmotion.com/BJ-2013-0316/figure4.htm
> > and the popup says 13.1.16_a and the interface is in Spanish (as it
> > should for me)
> >
> > WinXP, Firefox 21.0
> > Oracle Java 1.7.0_21
> >
> >
> >
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> -- 
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
> 
> 
> If nature does not answer first what we want,
> it is better to take what answer we get. 
> 
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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