[Jmol-users] JSmol update

[Wayne D. <wde...@ya...>]

Hi Bob,
Did anyone say they had trouble seeing the 'flexible fit' morph?

For those on Macs...

I wonder if anyone else had issues with the 'flexible fit' morph not showing smooth transitions using Firefox on the Macrunning OSX 10.8.4? It is Firefox version 21 that I am trying it with. I have cleared the cache, but I still see it really jumpy. Most times it just hangs on the initial view and then when I click in the JSmol window it jumps to 'the end' view. Occasionally it will show the highlights of the atoms in both molecules and then hang there until I click in it. It as if the refresh isn't working unless I am clicking in the JSmol window. 

It works smoothly in Chrome on the same computer.

Wayne


________________________________
 From: "jmo...@li..." <jmo...@li...>
To: jmo...@li... 
Sent: Sunday, June 16, 2013 2:00 PM
Subject: JSmol update
 


*Dihedral-driven morphs*

But, of course, linear morphing could produce some very strange results.
Art Cox and I wondered if an animated "flexible fit" would work. The new
feature allows you to do a bond mapping between two models and then do a
flexible fit -- rotating dihedral angles only -- to transform one model
into another or to take one model to the closest resemblance of another
simply by driving dihedral angles. Art and I have all sorts of ideas where
this might be useful; what do you think?

You can check it out here:

http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm

center column link "flexible fit," which runs the following script. Several
new ideas there:


Enjoy!

Bob



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