Re: [Jmol-users] Help with ChemDoodle Web

[Otis R. <osr...@ch...>]

Thanks Bob,

That sounds like a plan if I can make it work in our AKA application. On a 3D view link in this application, I'm just trying to branch mobile devices to a non-Java option. Am I correct in assuming that in:

applet.loadFile("xxxx")

xxx can be a call to a server side script (my server) that loads a Resolver (or PubChem/ChemSpider) SDF file?

Otis



--
Otis Rothenberger
ot...@ch...
http://chemagic.com




On Apr 18, 2012, at 10:52 AM, Robert Hanson wrote:

> Otis, forget that. Don't go there. Period. This is just what we are setting up now, and you are going to love it.
> 
> 1) Use JmolCD.js
> 
> 2) Follow the lead shown in http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm. You can use JmolCD.js to create a standard ChemDoodle canvas or a Jmol applet or have Jmol choose automatically based on the browser capability. 
> 
> 3) There is no need to have the MOL data stuffed into a variable that way. Just load the file from your server just like for Jmol, even if it is just a ChemDoodle canvas, using:
> 
> applet.loadFile("xxxx")
> 
> 
> Bob
> 
> On Wed, Apr 18, 2012 at 9:17 AM, Otis Rothenberger <osr...@ch...> wrote:
> All,
> 
> I know this is not a ChemDoodle list, but with all the recent ChemDoodle activity on the list, I've been playing with the Web Components.
> 
> Here's a big frustration, and maybe someone on the list can help me: If I literally define a JavaScript molfile variable - e.g.:
> 
> lsdfStr = 'CH4\nAPtclcactv04181210043D 0 0.00000 0.00000\n \n 5 4 0 0 0 0 0 0 0 0999 V2000\n 0.0000 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 0.0000 -0.8900 -0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n 0.0000 0.8900 -0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n -0.8900 -0.0000 0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n 0.8900 -0.0000 0.6293 H 0 0 0 0 0 0 0 0 0 0 0 0\n 1 2 1 0 0 0 0\n 1 3 1 0 0 0 0\n 1 4 1 0 0 0 0\n 1 5 1 0 0 0 0\nM END\n$$$$\n'
> 
> then I can dynamically load it into a Transformer3D Canvas - no problem.
> 
> If on the other hand I define lsdfStr via AJAX to Resolver, subsequent use of the same load routine throws an obscure JS error - TypeError: h is undefined.
> 
> If I directly copy the returned AJAX text and paste it into a direct definition of lsdfStr, the dynamic load works.
> 
> Any thoughts would be appreciated.
> 
> Otis
> 
> --
> Otis Rothenberger
> ot...@ch...
> http://chemagic.com
> 
> 
> 
> 
> 
> ------------------------------------------------------------------------------
> Better than sec? Nothing is better than sec when it comes to
> monitoring Big Data applications. Try Boundary one-second
> resolution app monitoring today. Free.
> http://p.sf.net/sfu/Boundary-dev2dev
> _______________________________________________
> Jmol-users mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-users
> 
> 
> 
> 
> -- 
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
> 
> 
> If nature does not answer first what we want,
> it is better to take what answer we get. 
> 
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> Better than sec? Nothing is better than sec when it comes to
> monitoring Big Data applications. Try Boundary one-second 
> resolution app monitoring today. Free.
> http://p.sf.net/sfu/Boundary-dev2dev_______________________________________________
> Jmol-users mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-users