Re: [Jmol-users] Customized color gradients

[Robert H. <ha...@st...>]

You are just missing the information about what property to base the color
on. For example:

color atoms property_tim "myscheme=......."

should work fine.

Bob Hanson


On Sat, Sep 24, 2011 at 3:49 PM, Yingjie Lin <Yin...@ms...> wrote:

> Hi Angel,
>
> It is still not clear to me. I found a previous post by Bob and got the
> following to work:
>
> select 1.1;
> mydata={1.1}.occupancy.all;
> data 'property_tim @mydata';
> propertyColorScheme='bwr';
> color atoms property_tim;
>
> However, in stead of 'bwr' I would like the color to go from white(for the
> lowest values) to blue(for the highest values).
> And I would also like to have other spectrums such as white-to-green,
> white-to-red since I need to color several sets of atoms.
> I read the documentation you pointed to,  and believe that I can set my own
> color scheme by:
>
> *select 1.1; *
> *color "myScheme=[x00FF00] [xFFFF00] [x00FF00] [x00FFFF] [x0000FF]";*
> *color atoms "myScheme";*
>
> However, Jmol returns an error: invalid argument in color atom >>
> "myScheme" <<
> I don't understand how the six color values would define a color scheme.
>
> Any further instruction is appreciated. Thank you.
>
> - Yingjie
>
>
>
>
>
>
>
> On Sep 24, 2011, at 5:07 AM, jmo...@li...wrote:
>
> From: " Angel Herr?ez " <ang...@ua...>
> Subject: Re: [Jmol-users] Customized color gradients
> To: jmo...@li...
> Message-ID: <4E7...@an...>
> Content-Type: text/plain; charset=ISO-8859-1
>
> El 23 Sep 2011 a las 12:28, Yingjie Lin escribi?:
>
> I wonder whether color gradients can be customized
>
>
>
> Yes! Please see
> http://chemapps.stolaf.edu/jmol/docs/#colorscheme
>
>
>
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900