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Re: [Jmol-users] freeze after 'color hbonds blue'
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From: Robert H. <ha...@st...> - 2011-08-10 03:59:01
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sure. On Tue, Aug 9, 2011 at 12:26 AM, Nicolas Vervelle <nve...@gm...>wrote: > Hi Bob, > > 12.2.RC3 should now be available on sourceforge<http://sourceforge.net/projects/jmol/files/Jmol%20Prerelease%20Tests/Prerelease%2012.1/Prerelease%2012.2.RC3/> > . > I can't update Jmol.properties (no SVN access), can you do it ? > > Nico > > > On Mon, Aug 8, 2011 at 11:18 PM, Robert Hanson <ha...@st...> wrote: > >> Thanks, Alex. I totally messed up with Jmol 12.2.RC2. It is not usable and >> should be shredded. >> >> Nico, as soon as you can, please replace that with 12.2.RC3. Thanks. I >> can't seem to delete 12.2.RC2 from SourceForge. >> >> In the mean time, >> http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip has the >> fix. >> >> Really appreciate your pointing that out. >> >> >> On Mon, Aug 8, 2011 at 12:52 PM, Robert Hanson <ha...@st...>wrote: >> >>> Argh. EnumPalette! OK. That's fixed; will get a copy out later today. >>> >>> >>> On Mon, Aug 8, 2011 at 7:35 AM, Alexander Rose < >>> ale...@we...> wrote: >>> >>>> Hi, >>>> >>>> >>>> when I do this on MAC OSX 10.6.8, Java 1.6.0_26, Jmol 12.2.RC2 >>>> >>>> load =1crn; >>>> color hbonds blue; >>>> >>>> or >>>> >>>> load =1crn; >>>> calculate hbonds; >>>> color hbonds blue; >>>> >>>> Jmol freezes/stops redrawing (works in 12.2.RC1 though) >>>> >>>> >>>> Some more observations regarding hbonds >>>> >>>> load =1crn; connect ({191}) ({219}) HBOND # works fine >>>> load =1crn; connect ({191}) ({219}) HBOND radius 0.1 ModifyOrCreate # >>>> works fine >>>> load =1crn; connect ({191}) ({219}) HBOND radius 0.1 # does not work, >>>> but seems to work when the bond had existed >>>> load =1crn; connect ({191}) ({219}) HBOND COLOR blue; # does not work; >>>> freezes/stops redrawing >>>> load =1crn; connect ({191}) ({219}) HBOND COLOR blue ModifyOrCreate; # >>>> does not work; freezes/stops redrawing >>>> load =1crn; connect ({191}) ({219}) HBOND blue; # does not work; >>>> freezes/stops redrawing >>>> load =1crn; connect ({191}) ({219}) HBOND blue ModifyOrCreate; # does >>>> not work; freezes/stops redrawing >>>> load =1crn; connect ({191}) ({219}) HBOND radius 0.1 blue >>>> ModifyOrCreate; # does not work; freezes/stops redrawing >>>> load =1crn; connect ({191}) ({219}) HBOND radius 0.1 color blue >>>> ModifyOrCreate; # does not work; freezes/stops redrawing >>>> >>>> >>>> @Bob Great stuff in 12.2! Especially the new options to modify >>>> isosurfaces and the contact command are great. >>>> >>>> Best >>>> Alex >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >>>> The must-attend event for mobile developers. Connect with experts. >>>> Get tools for creating Super Apps. See the latest technologies. >>>> Sessions, hands-on labs, demos & much more. Register early & save! >>>> http://p.sf.net/sfu/rim-blackberry-1 >>>> _______________________________________________ >>>> Jmol-users mailing list >>>> Jmo...@li... >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>> >>> >>> >>> -- >>> Robert M. Hanson >>> Professor of Chemistry >>> St. Olaf College >>> 1520 St. Olaf Ave. >>> Northfield, MN 55057 >>> http://www.stolaf.edu/people/hansonr >>> phone: 507-786-3107 >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >> >> >> >> -- >> Robert M. Hanson >> Professor of Chemistry >> St. Olaf College >> 1520 St. Olaf Ave. >> Northfield, MN 55057 >> http://www.stolaf.edu/people/hansonr >> phone: 507-786-3107 >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> The must-attend event for mobile developers. Connect with experts. >> Get tools for creating Super Apps. See the latest technologies. >> Sessions, hands-on labs, demos & much more. Register early & save! >> http://p.sf.net/sfu/rim-blackberry-1 >> _______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > ------------------------------------------------------------------------------ > uberSVN's rich system and user administration capabilities and model > configuration take the hassle out of deploying and managing Subversion and > the tools developers use with it. Learn more about uberSVN and get a free > download at: http://p.sf.net/sfu/wandisco-dev2dev > > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |