Re: [Jmol-users] display/hide isosurfaces

[Daniel C. <dan...@gm...>]

The problem is that I do not know which is the isosurface displayed... so I
want to hide everything and show the isosurface that was displayed before
hiding, I do not know the ID... I do not know if I am clear, but I think
that at the end I will put a show/hide checkbox for the structure and a
drop-down menu for the surface with the options "hide", "show solvent
accessible surface", "show solvent excluded surface", I think that way I
avoid any problem, what do you think?
Thanks again Robert.

2011/7/27 Robert Hanson <ha...@st...>

>
>
> On Wed, Jul 27, 2011 at 8:22 AM, Daniel Carbajo <dan...@gm...>wrote:
>
>> Just one little doubt... can't the isosurfaces be displayed/hidden?
>
>
> absolutely.
>
> isosurface ID <someID> ON/OFF
>
> You're just not specifying the  isosurface ID. When you make those
> isosurfaces, give them names you can refer to.
>
>
>>  I calculate both solvent accessible surface and solvent excluded surface
>> of a protein. One of the display options that I have for the protein is
>> "cartoon+solvent excluded surface"; doing "display displayed, 1.1" and "hide
>> hidden, 1.1" I see how it does not affect the solvent excluded surface.
>>
>
> by the way,  12.2 will have
>
> display add 1.1
> hide add 1.1
>
> as well as
>
> display remove 1.1
> hide remove 1.1
>
> (select, display, hide)
>
> just a convenience; we were using  your  method a lot and got tired of it!
>
>
>
>
>> On the other hand, if I do "display displayed, 1.1; isosurface on" and
>> "hide hidden, 1.1; isosurface off", the solvent excluded surface disappears
>> correctly, but then both surfaces (the solvent excluded and the solvent
>> accessible ones) appear... So how can I just hide/display the isosurface
>> that was displayed before hiding?
>>
>
>
>
>> Thanks,
>> Daniel
>>
>>
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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