From: Robert H. <ha...@st...> - 2010-08-29 17:05:20
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On the other hand, the WITHIN option still works with any surface, so if you use that, the isosurface from a JVXL file might be truncated. I don't think isosurface SLAB or CAP has any action in this regard -- though maybe it should.... On Sun, Aug 29, 2010 at 11:59 AM, Robert Hanson <ha...@st...> wrote: > I can't imagine that anything having to do with the creation of the > isosurface from a JVXL file has anything to do with atom selection. But, > yes, mapping would probably be that way. Right.... For instance?.... > > > > On Sun, Aug 29, 2010 at 12:46 AM, Frieda Reichsman <fri...@ma...>wrote: > >> Hi, >> >> Does the display of an isosurface (the area it covers) vary depending on >> what is selected at the time you call the jvxl file? I don't recall this, >> but it is true in 12.0.8 and 12.0.10. I expect the surface in a jvxl file to >> be the same surface all the time... but perhaps somehow I have been lucky >> enough not to trip over this before. >> >> Or perhaps it varies when you are mapping something to the surface, e.g., >> isosurface surf1 "3d/finalsurface.jvxl" map property_x color translucent >> -1 colorscheme "user"; >> but then I would expect the color might vary with the selection, but not >> the surface itself. >> >> Frieda >> >> >> >> On Aug 27, 2010, at 3:47 PM, Robert Hanson wrote: >> >> Jmol users -- >> >> The isosurface/JVXL problems in 12.0 and 12.1 have been fixed. (Jmol 12 >> could crash opening older nonXML JVXL files.) >> >> http:/chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip >> >> 12.0.10 will have that in it, probably next week. >> >> -- Bob >> >> On Mon, Aug 23, 2010 at 8:41 AM, Pshemak Maslak <pm...@ch...> wrote: >> >>> Hello, >>> >>> >>> 4. 12.08 has difficulty in displaying jvxl file written by 11.8. It does >>> it very slowly (several minutes) and --after finally loading -- the >>> model cannot be interacted with. I have encountered only one example of >>> this difficulty, and the jvxl file re-written with 12.08 Jmol works >>> fine. Could this have anything to do with the changes in the spartan >>> file reader? (my jvxl files are based on smol spartan files) >>> >>> >>> PM >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> This SF.net email is sponsored by >>> >>> Make an app they can't live without >>> Enter the BlackBerry Developer Challenge >>> http://p.sf.net/sfu/RIM-dev2dev >>> _______________________________________________ >>> Jmol-users mailing list >>> Jmo...@li... >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >> >> >> >> -- >> Robert M. Hanson >> Professor of Chemistry >> St. Olaf College >> 1520 St. Olaf Ave. >> Northfield, MN 55057 >> http://www.stolaf.edu/people/hansonr >> phone: 507-786-3107 >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> ------------------------------------------------------------------------------ >> Sell apps to millions through the Intel(R) Atom(Tm) Developer Program >> Be part of this innovative community and reach millions of netbook users >> worldwide. Take advantage of special opportunities to increase revenue and >> >> speed time-to-market. Join now, and jumpstart your future. >> >> http://p.sf.net/sfu/intel-atom-d2d_______________________________________________ >> >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> ------------------------------------------------------------------------------ >> Sell apps to millions through the Intel(R) Atom(Tm) Developer Program >> Be part of this innovative community and reach millions of netbook users >> worldwide. Take advantage of special opportunities to increase revenue and >> speed time-to-market. Join now, and jumpstart your future. >> http://p.sf.net/sfu/intel-atom-d2d >> _______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |