[Jmol-commits] SF.net SVN: jmol:[12197] trunk/Jmol/src/org/jmol/modelset/Atom.java

[<ha...@us...>]

Revision: 12197
          http://jmol.svn.sourceforge.net/jmol/?rev=12197&view=rev
Author:   hansonr
Date:     2010-01-24 01:26:07 +0000 (Sun, 24 Jan 2010)

Log Message:
-----------


Modified Paths:
--------------
    trunk/Jmol/src/org/jmol/modelset/Atom.java

Modified: trunk/Jmol/src/org/jmol/modelset/Atom.java
===================================================================
--- trunk/Jmol/src/org/jmol/modelset/Atom.java	2010-01-24 01:13:28 UTC (rev 12196)
+++ trunk/Jmol/src/org/jmol/modelset/Atom.java	2010-01-24 01:26:07 UTC (rev 12197)
@@ -938,7 +938,10 @@
     //  if it does not show up itself as part of the structure
     //  (this will be a difference in terms of *clickability*).
     // except BACKBONE
-    flags |= group.shapeVisibilityFlags & ~JmolConstants.getShapeVisibilityFlag(JmolConstants.SHAPE_BACKBONE);
+    flags |= group.shapeVisibilityFlags;
+    if (getSpecialAtomID() != JmolConstants.ATOMID_ALPHA_CARBON)
+      flags &= ~JmolConstants.BACKBONE_VISIBILITY_FLAG;
+
     // We know that (flags & AIM), so now we must remove that flag
     // and check to see if any others are remaining.
     // Only then is the atom considered visible.


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