From: Robert H. <ha...@st...> - 2008-11-11 17:03:58
|
make that Jmol 11.7.12 (not yet released, but I'm looking at a surface now.) On Tue, Nov 11, 2008 at 11:03 AM, Robert Hanson <ha...@st...> wrote: > Jmol 11.7.11 will read these efvet files. No JVXL creation, though. The way > it will work (for now) is that you indicate which data type you want with a > number after the filename. > > Can you find any examples of efvet files that contain multiple surfaces? > > Bob > > > > > > On Mon, Nov 10, 2008 at 5:24 PM, Frieda Reichsman <fri...@ma...>wrote: > >> OK, I will see about contacting them. >> >> On Nov 10, 2008, at 5:28 PM, Robert Hanson wrote: >> >> OK, those files contain basically the same information as an isosurface -- >> vertex list, vertex color, vertex value (several!), and triangles list. >> That's all you need to do just about anything in Jmol with a surface. Can't >> create a JVXL file. But if this data really is isosurface data, then it >> might be possible to get the developers of that program to also output cube >> data instead of this final form. >> >> Bob >> >> >> On Mon, Nov 10, 2008 at 11:06 AM, Robert Hanson <ha...@st...>wrote: >> >>> Sounds very interesting. What's more, Jmol could display the data as JVXL >>> files possibly and compress the data immensely. >>> >>> Do you have some of these files, Frieda? >>> >>> On Mon, Nov 10, 2008 at 9:48 AM, Frieda Reichsman <fri...@ma...>wrote: >>> >>>> Hi Bob, >>>> >>>> eF-site ( http://ef-site.hgc.jp/eF-site/ ) is a database for molecular >>>> surfaces, coloring by electrostatic potential. Seems like the entire >>>> contents of the pdb is available - a great resource. The MEP data can >>>> be obtained in an "efvet" file, described here: >>>> http://ef-site.hgc.jp/eF-site/about.html >>>> >>>> Could you take a look and consider including this file type in what >>>> Jmol can read? (I tried to check whether Jmol can already read it - >>>> efvet is not listed in the wiki, don't know if that is up to date, tho >>>> - and the script documentation server appears to be down this morning). >>>> >>>> Thanks, >>>> Frieda >>>> >>>> >>>> ---- >>>> >>>> Frieda Reichsman, PhD >>>> Senior Research Scientist >>>> The Concord Consortium >>>> 25 Love Lane >>>> Concord, MA 01742 >>>> >>>> >>>> >>>> >>>> >>>> ------------------------------------------------------------------------- >>>> This SF.Net email is sponsored by the Moblin Your Move Developer's >>>> challenge >>>> Build the coolest Linux based applications with Moblin SDK & win great >>>> prizes >>>> Grand prize is a trip for two to an Open Source event anywhere in the >>>> world >>>> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >>>> _______________________________________________ >>>> Jmol-users mailing list >>>> Jmo...@li... >>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>> >>> >>> >>> -- >>> Robert M. Hanson >>> Professor of Chemistry >>> St. Olaf College >>> 1520 St. Olaf Ave. >>> Northfield, MN 55057 >>> http://www.stolaf.edu/people/hansonr >>> phone: 507-786-3107 >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >> >> >> >> -- >> Robert M. Hanson >> Professor of Chemistry >> St. Olaf College >> 1520 St. Olaf Ave. >> Northfield, MN 55057 >> http://www.stolaf.edu/people/hansonr >> phone: 507-786-3107 >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> ------------------------------------------------------------------------- >> This SF.Net email is sponsored by the Moblin Your Move Developer's >> challenge >> Build the coolest Linux based applications with Moblin SDK & win great >> prizes >> Grand prize is a trip for two to an Open Source event anywhere in the >> world >> >> http://moblin-contest.org/redirect.php?banner_id=100&url=/_______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> ------------------------------------------------------------------------- >> This SF.Net email is sponsored by the Moblin Your Move Developer's >> challenge >> Build the coolest Linux based applications with Moblin SDK & win great >> prizes >> Grand prize is a trip for two to an Open Source event anywhere in the >> world >> http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> _______________________________________________ >> Jmol-users mailing list >> Jmo...@li... >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |