Re: [Jmol-users] color hbonds

[Bob H. <ha...@st...>]

Brian McMahon wrote:

>I'm seeing something that might be related. In Jmol-11.5.30
>I select two atoms, "connect all selected", and colour the
>bond pink.  All well. But when I save the Jmol state and
>reload, that new bond does not appear (the other bonds that
>Jmol had calculated still appear).
>
>The same sequence of events works as expected in Jmol-11.4_RC1.
>
>  
>
OK, I should be able to track that down.

>Note also that in trying to check against the latest Sourceforge tarball
>(11.5.31), the applet loading hangs while my server errors with 
>
>"File does not exist: .../java/jmol/javax/vecmath/Vector4d.class"
>
>  
>
Yes, I noticed that -- the fix is up there now, for 11.5.32.


>Regards
>Brian
>_________________________________________________________________________
>Brian McMahon                                       tel: +44 1244 342878
>Research and Development Officer                    fax: +44 1244 314888
>International Union of Crystallography            e-mail:  bm...@iu...
>5 Abbey Square, Chester CH1 2HU, England
>
>PS to Bob Hanson. Bob, did you receive the CIFs I sent to you
>off-list for thermal ellipsoid testing? I didn't receive an
>expected acknowledgement, and just want to check that direct
>email has got through.
>
>On Fri, Apr 25, 2008 at 04:36:04PM -0500, Bob Hanson wrote:
>  
>
>>I'm not seeing that problem. Did you select the atoms to which the 
>>hbonds are connected first?
>>
>>Karl Oberholser wrote:
>>
>>    
>>
>>>Hi All,
>>>I have tried to change the color of hydrogen bonds from the color of 
>>>the elements using the command 'color hbonds white', but there is no 
>>>change in color.  I have tried changing the color at different times 
>>>with different scripts.
>>> 
>>>Karl
>>>      
>>>
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900