[Jmol-commits] SF.net SVN: jmol: [8430] branches/v11_2/Jmol/src/org/jmol/viewer

[<ha...@us...>]

Revision: 8430
          http://jmol.svn.sourceforge.net/jmol/?rev=8430&view=rev
Author:   hansonr
Date:     2007-10-15 12:07:57 -0700 (Mon, 15 Oct 2007)

Log Message:
-----------
version=11.2.15_dev # adds    "OP1" and "OP2" as backbone designators (new PDB designation)

Modified Paths:
--------------
    branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties
    branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java

Modified: branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties
===================================================================
--- branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties	2007-10-15 19:07:31 UTC (rev 8429)
+++ branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties	2007-10-15 19:07:57 UTC (rev 8430)
@@ -1,5 +1,6 @@
 version=11.2.15_dev
 
+# adds    "OP1" and "OP2" as backbone designators (new PDB designation)
 # bug fix: rockets color incorrect for head groups
 
 # -----------------------------------------------------------------------------

Modified: branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java
===================================================================
--- branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java	2007-10-15 19:07:31 UTC (rev 8429)
+++ branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java	2007-10-15 19:07:57 UTC (rev 8430)
@@ -2027,9 +2027,10 @@
     "O",   // 40 - carbonyl oxygen
     "O1",  // 41 - carbonyl oxygen in some protein residues (4THN)
     null,  // 42
-    null,  // 43
-    null,  // 44
 
+    "OP1", // 43 - first equivalent oxygen on phosphorus of phosphate -- new designation
+    "OP2", // 44 - second equivalent oxygen on phosphorus of phosphate -- new designation
+
     // Terminal nuclic acid
     "H5T", // 45 - 5' terminus hydrogen which replaces P + O1P + O2P
     "O5T", // 46 - 5' terminus oxygen which replaces P + O1P + O2P


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