From: <ha...@us...> - 2007-07-25 10:21:32
|
Revision: 8013 http://jmol.svn.sourceforge.net/jmol/?rev=8013&view=rev Author: hansonr Date: 2007-07-25 03:21:29 -0700 (Wed, 25 Jul 2007) Log Message: ----------- version=11.2.7 # bug fix: reading of JVXL files for orbitals loses phase information Modified Paths: -------------- branches/v11_2/Jmol/src/org/jmol/jvxl/readers/JvxlReader.java branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties Modified: branches/v11_2/Jmol/src/org/jmol/jvxl/readers/JvxlReader.java =================================================================== --- branches/v11_2/Jmol/src/org/jmol/jvxl/readers/JvxlReader.java 2007-07-25 10:18:27 UTC (rev 8012) +++ branches/v11_2/Jmol/src/org/jmol/jvxl/readers/JvxlReader.java 2007-07-25 10:21:29 UTC (rev 8013) @@ -465,6 +465,7 @@ fractionPtr = 0; int vertexCount = meshData.vertexCount; short[] colixes = meshData.vertexColixes; + float[] vertexValues = meshData.vertexValues; fractionData = new StringBuffer(); strFractionTemp = (isJvxl ? jvxlColorDataRead : ""); if (isJvxl && strFractionTemp.length() == 0) { @@ -522,12 +523,15 @@ colorFractionBase, colorFractionRange, 0.5f); value = params.valueMappedToRed + fraction * colorRange; } + vertexValues[i] = value; ++cpt; if (value < contourPlaneMinimumValue) contourPlaneMinimumValue = value; if (value > contourPlaneMaximumValue) contourPlaneMaximumValue = value; - + + //note: these are just default colorings + //orbital color had a bug through 11.2.6/11.3.6 if (params.isContoured) { marchingSquares.setContourData(i, value); } else if (params.colorBySign) { Modified: branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties =================================================================== --- branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties 2007-07-25 10:18:27 UTC (rev 8012) +++ branches/v11_2/Jmol/src/org/jmol/viewer/Jmol.properties 2007-07-25 10:21:29 UTC (rev 8013) @@ -1,5 +1,7 @@ -version=11.2.7_dev +version=11.2.7 +# bug fix: reading of JVXL files for orbitals loses phase information + # ----------------------------------------------------------------------------- #version=11.2.6 This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |