Re: [Jmol-developers] Jmol and Memory -- Problem Fixed?

[Bob H. <ha...@st...>]

thanks, that's certainly interesting that extractModel gives that error. 
Oh, I know -- you tried to make a MOL file with more than 999 atoms. 
That's all. extractModel is admittedly a bit crude.

OK,   well, then, that is good news. Now if Miguel would tell me the 
same, I'd be quite pleased.


Timothy Driscoll wrote:

> On May 17, 2006, at 1:50 p, Bob Hanson wrote:
>
> I do see an error when I click extractModel, though:
>
> java.security.PrivilegedActionException:  
> java.lang.reflect.InvocationTargetException
>     at java.security.AccessController.doPrivileged(Native Method)
>     at sun.plugin.liveconnect.SecureInvocation$2.run 
> (SecureInvocation.java:212)
>     at java.security.AccessController.doPrivileged(Native Method)
>     at sun.plugin.liveconnect.SecureInvocation.CallMethod 
> (SecureInvocation.java:191)
>     at sun.plugin.liveconnect.SecureInvocation.access$300 
> (SecureInvocation.java:51)
>     at sun.plugin.liveconnect.SecureInvocation$CallMethodThread.run 
> (SecureInvocation.java:122)
> Caused by: java.lang.reflect.InvocationTargetException
>     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     at sun.reflect.NativeMethodAccessorImpl.invoke 
> (NativeMethodAccessorImpl.java:39)
>     at sun.reflect.DelegatingMethodAccessorImpl.invoke 
> (DelegatingMethodAccessorImpl.java:25)
>     at java.lang.reflect.Method.invoke(Method.java:585)
>     at sun.plugin.javascript.invoke.JSInvoke.invoke(JSInvoke.java:19)
>     at sun.reflect.GeneratedMethodAccessor8.invoke(Unknown Source)
>     at sun.reflect.DelegatingMethodAccessorImpl.invoke 
> (DelegatingMethodAccessorImpl.java:25)
>     at java.lang.reflect.Method.invoke(Method.java:585)
>     at sun.plugin.javascript.JSClassLoader.invoke(JSClassLoader.java:44)
>     at sun.plugin.liveconnect.PrivilegedCallMethodAction.run 
> (SecureInvocation.java:580)
>     ... 6 more
> Caused by: java.lang.StringIndexOutOfBoundsException: String index  
> out of range: -1
>     at java.lang.String.substring(String.java:1768)
>     at org.jmol.viewer.ModelManager.rFill(ModelManager.java:832)
>     at 
> org.jmol.viewer.ModelManager.getBondRecordMOL(ModelManager.java:826)
>     at 
> org.jmol.viewer.ModelManager.getModelExtract(ModelManager.java:800)
>     at org.jmol.viewer.Viewer.getModelExtract(Viewer.java:2985)
>     at org.jmol.viewer.PropertyManager.getPropertyAsObject 
> (PropertyManager.java:194)
>     at 
> org.jmol.viewer.PropertyManager.getProperty(PropertyManager.java: 158)
>     at org.jmol.viewer.Viewer.getProperty(Viewer.java:2980)
>     at org.jmol.applet.Jmol.getPropertyAsString(Jmol.java:556)
>     at JmolApplet.getPropertyAsString(JmolApplet.java:72)
>     ... 16 more
> [3550] :Error - java.security.PrivilegedActionException:  
> java.security.PrivilegedActionException:  
> java.lang.reflect.InvocationTargetException
>
>
>
>>
>>>
>>>> d) press LOAD. Everything seem to be OK?
>>>>
>>> nope. :-(  third time at the page, I pushed the 'load' button and  
>>> it  locked up my browser.  I could not continue with the other steps.
>>>
>> Macs!!!
>>
> watch it, man.  ;-)
>

Sorry, hit SEND before I finished that thought:

   Macs!!! You have to love them for what they are.

:)

Bob