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[Jmol-users] FirstGlance in Jmol: new version
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From: Eric M. <em...@mi...> - 2006-02-07 23:13:47
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<html> <body> A new version of FirstGlance in Jmol (<a href="http://firstglance.jmol.org/" eudora="autourl">http://firstglance.jmol.org</a>) has been released. FirstGlance in Jmol can display any PDB file that is online. Nothing need be installed beforehand (except possibly a quick and painless java upgrade via http://java.com), and it works in popular browsers and platforms including MSIE on Windows, Safari or Firefox on Mac OSX, and Firefox on linux.<br><br> Starting with the February 2006 issue, <i>Nature Structural and Molecular Biology</i> has "3D View" links to display new structures in FirstGlance in Jmol.<br> <a href="http://www.nature.com/nsmb/" eudora="autourl">http://www.nature.com/nsmb</a><a href="http://www.nature.com/nsmb/" eudora="autourl">/</a><br> An editorial in the February 2006 issue, entitled <i>We're living in a 3D world,</i> introduces this new feature.<br><br> Changes: The initial molecular view now shows ligands and disulfide bonds by default, and has a checkbox (under "More Views.." or "Ligands+") to highlight non-standard amino acids or nucleotides. Clicking on an atom now produces a large, clear identification report (rather than centering on that atom, as in the previous version). There is a new atom centering dialog, with better controls. The complete list of improvements: <a href="http://molvis.sdsc.edu/fgij/versions.htm" eudora="autourl">http://molvis.sdsc.edu/fgij/versions.htm</a><br><br> <x-sigsep><p></x-sigsep> /* - - - - - - - - - - - - - - - - - - - - - - - - - - -<br> Eric Martz, Professor Emeritus, Dept Microbiology<br> U Mass, Amherst -- <a href="http://www.umass.edu/molvis/martz" eudora="autourl">http://www.umass.edu/molvis/martz</a><br><br> Biochem 3D Education Resources <a href="http://molviz.org/" eudora="autourl">http://MolviZ.org</a><br> See 3D Molecules, Install Nothing! - <a href="http://firstglance.jmol.org/" eudora="autourl">http://firstglance.jmol.org</a><br> Protein Explorer - 3D Visualization: <a href="http://proteinexplorer.org/" eudora="autourl">http://proteinexplorer.org</a><br> Workshops: <a href="http://workshops.proteinexplorer.org/" eudora="autourl">http://workshops.proteinexplorer.org</a><br> World Index of Molecular Visualization Resources: <a href="http://molvisindex.org/" eudora="autourl">http://molvisindex.org</a><br> ConSurf - Find Conserved Patches in Proteins: <a href="http://consurf.tau.ac.il/" eudora="autourl">http://consurf.tau.ac.il</a><br> Atlas of Macromolecules: <a href="http://atlas.proteinexplorer.org/" eudora="autourl">http://atlas.proteinexplorer.org</a><br> PDB Lite Macromolecule Finder: <a href="http://pdblite.org/" eudora="autourl">http://pdblite.org</a><br> Molecular Visualization EMail List (molvis-list):<br> <a href="http://bioinformatics.org/mailman/listinfo/molvis-list" eudora="autourl">http://bioinformatics.org/mailman/listinfo/molvis-list</a><br> - - - - - - - - - - - - - - - - - - - - - - - - - - - */<br> </body> </html> |