[Jmol-developers] [ jmol-Bugs-1290941 ] Unable to load file of PDB entry "1SOM"

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Bugs item #1290941, was opened at 2005-09-14 12:18
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Category: File Input/Output
Group: v10
Status: Open
Resolution: None
Priority: 5
Submitted By: Rolf Huehne (rhuehne)
Assigned to: Miguel (migueljmol)
Summary: Unable to load file of PDB entry "1SOM"

Initial Comment:
Version 10.00.36 and 10.00.00 are unable to load the
PDB file of PDB entry "1SOM". 

The error occurs independently of the method to provide
the file (opened directly using the application or by
specifying an URL that sends the original PDB file to
the applet).

The java console shows the following messages:

FileManager.openFile(http://www.fli-leibniz.de/cgi-bin/idb_send.pl?CODE=1SOM)
SmarterJmolAdapter:The Resolver thinks:Pdb
java.lang.NullPointerException
	at
org.jmol.adapter.smarter.AtomSetCollectionReader.parseToken(AtomSetCollectionReader.java:224)
	at
org.jmol.adapter.smarter.PdbReader.formul(PdbReader.java:437)
	at
org.jmol.adapter.smarter.PdbReader.readAtomSetCollection(PdbReader.java:95)
	at
org.jmol.adapter.smarter.Resolver.resolve(Resolver.java:60)
	at
org.jmol.adapter.smarter.SmarterJmolAdapter.openBufferedReader(SmarterJmolAdapter.java:56)
	at
org.jmol.viewer.FileManager$FileOpenThread.openReader(FileManager.java:350)
	at
org.jmol.viewer.FileManager$FileOpenThread.openInputStream(FileManager.java:343)
	at
org.jmol.viewer.FileManager$FileOpenThread.run(FileManager.java:320)
	at
org.jmol.viewer.FileManager.openFile(FileManager.java:89)
	at org.jmol.viewer.Viewer.openFile(Viewer.java:982)
	at org.jmol.viewer.Eval.load(Eval.java:1682)
	at
org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:351)
	at org.jmol.viewer.Eval.script(Eval.java:1813)
	at
org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:366)
	at org.jmol.viewer.Eval.run(Eval.java:291)
	at java.lang.Thread.run(Thread.java:534)
error opening
http://www.fli-leibniz.de/cgi-bin/idb_send.pl?CODE=1SOM
java.lang.NullPointerException


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