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[Jmol-commits] CVS: Jmol-web/source/doc/demo/strands index.html,1.5,1.6
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From: Miguel <mig...@us...> - 2004-07-31 08:08:44
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Update of /cvsroot/jmol/Jmol-web/source/doc/demo/strands In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13214/strands Modified Files: index.html Log Message: Jmol.js Index: index.html =================================================================== RCS file: /cvsroot/jmol/Jmol-web/source/doc/demo/strands/index.html,v retrieving revision 1.5 retrieving revision 1.6 diff -u -r1.5 -r1.6 --- index.html 22 May 2004 22:04:54 -0000 1.5 +++ index.html 31 Jul 2004 08:08:35 -0000 1.6 @@ -1,268 +1,64 @@ <html> -<head><title>jmol applet strands demo</title> -</head> -<body> -<table border="1"> -<tr> -<td> - -<h2>jellyfish <br /> Green Flourescent Protein 1gfl.pdb</h2> -<applet name="jmol" code="JmolApplet" archive="JmolApplet.jar" - codebase="../jmol" - width="400" height="400" mayscript="true" > - <param name="progressbar" value="true" /> - <param name="progresscolor" value="blue" /> - <param name="boxmessage" value="Downloading JmolApplet ..." /> - <param name="boxbgcolor" value="black" /> - <param name="boxfgcolor" value="white" /> - - <param name="load" value="1gfl.pdb.gz" /> - <param name="script" value="spacefill off; wireframe" /> -</applet> -</td> - -<td> -Strands offer a representation the protein backbone using lines. -Control points are chosen midway between adjacent alpha carbons. -The strands are arranged perpendicular to the peptide plane. -A hermite cubic curve is used to smoothly connect the points.<br /> - -The script command <b>strands on</b> will show strands which are -1.5 angstroms wide in alpha-helices and beta-sheets, 0.5 angstroms -wide elsewhere. <br /> - -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands on" /> - <param name="target" value="jmol" /> - <param name="script" value="strands on" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands off" /> - <param name="target" value="jmol" /> - <param name="script" value="strands off" /> -</applet><br /> - - -Color your strands with solid colors<br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands wheat" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands wheat" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands aquamarine" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands aquamarine" /> -</applet><br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands goldenrod" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands goldenrod" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands slateblue" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands slateblue" /> -</applet><br /> - -or by structure type or by amino acid type<br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands structure" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands structure" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands amino" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands amino" /> -</applet><br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands shapely" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands shapely" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="150" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="color strands none" /> - <param name="target" value="jmol" /> - <param name="script" value="color strands none" /> -</applet><br /> - - -The number of strands can be controlled.<br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 1" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 1" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 2" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 2" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 3" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 3" /> -</applet><br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 4" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 4" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 5" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 5" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 6" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 6" /> -</applet><br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 9" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 9" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="set strands 12" /> - <param name="target" value="jmol" /> - <param name="script" value="set strands 12" /> -</applet><br /> - -Explict strand widths can also be chosen.<br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands 0.5" /> - <param name="target" value="jmol" /> - <param name="script" value="strands 0.5" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands 1.0" /> - <param name="target" value="jmol" /> - <param name="script" value="strands 1.0" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands 1.5" /> - <param name="target" value="jmol" /> - <param name="script" value="strands 1.5" /> -</applet><br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands 2.0" /> - <param name="target" value="jmol" /> - <param name="script" value="strands 2.0" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands 3.0" /> - <param name="target" value="jmol" /> - <param name="script" value="strands 3.0" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="strands 4.0" /> - <param name="target" value="jmol" /> - <param name="script" value="strands 4.0" /> -</applet><br /> - -Take a closer look<br /> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="zoom 200" /> - <param name="target" value="jmol" /> - <param name="script" value="zoom 200" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="zoom 400" /> - <param name="target" value="jmol" /> - <param name="script" value="zoom 400" /> -</applet> -<applet code="JmolAppletControl" archive="JmolApplet.jar" - codebase="../jmol" - height="20" width="100" mayscript="true" > - <param name="type" value="button" /> - <param name="label" value="zoom 100" /> - <param name="target" value="jmol" /> - <param name="script" value="zoom 100" /> -</applet><br /> - -</td> - -</tr> -</table> -</body> + <head> + <title>jmol applet strands demo</title> + <script src="../jmol/Jmol.js"></script> + <script>jmolSetCodebase("../jmol");</script> + </head> + <body> + <form> + <table border="1"> + <tr> + <td> + <h2>jellyfish <br /> Green Flourescent Protein 1gfl.pdb</h2> + + <script>jmolApplet(400, "1gfl.pdb.gz", "spacefill off; wireframe");</script> + </td> + + <td> + Strands offer a representation the protein backbone using lines. + Control points are chosen midway between adjacent alpha carbons. + The strands are arranged perpendicular to the peptide plane. + A hermite cubic curve is used to smoothly connect the points.<br /> + + <script> + jmolCheckbox("strands on", "strands off"); + jmolHtml("Strands"); + jmolBr(); + jmolHtml("Color your strands<br />"); + jmolRadio("color", "color strands none", "checked"); + jmolHtml("none<br />"); + jmolRadio("color", "color strands aquamarine"); + jmolHtml("aquamarine<br />"); + jmolRadio("color", "color strands slateblue"); + jmolHtml("slateblue<br />"); + jmolRadio("color", "color strands goldenrod"); + jmolHtml("goldenrod<br />"); + jmolRadio("color", "color strands structure"); + jmolHtml("structure<br />"); + jmolRadio("color", "color strands amino"); + jmolHtml("amino<br />"); + jmolRadio("color", "color strands shapely"); + jmolHtml("shapely<br />"); + </script> + <br /> + + Strand count<br /> + <script> + jmolRadio("count", "set strands 1"); jmolHtml("1 "); + jmolRadio("count", "set strands 2"); jmolHtml("2 "); + jmolRadio("count", "set strands 3"); jmolHtml("3 "); + jmolRadio("count", "set strands 5", "checked"); jmolHtml("5 "); + jmolRadio("count", "set strands 7"); jmolHtml("7 "); + jmolRadio("count", "set strands 9"); jmolHtml("9 "); + jmolRadio("count", "set strands 11");jmolHtml("11 "); + jmolRadio("count", "set strands 15");jmolHtml("15 "); + jmolRadio("count", "set strands 20");jmolHtml("20 "); + </script> + + </td> + + </tr> + </table> + </form> + </body> </html> |