Re: [Jmol-developers] [ jmol-Bugs-1192487 ] NullPointerException in Monomer.

[Nicolas V. <nve...@cl...>]

From: "Miguel" <mi...@jm...>
>From the stack dump it looks like to me that the Jmol code is trying to
>determine whether or not the atoms are part of an amino acid.
>
>It is not clear to me why this is happening. It normally occurs only for
>..pdb and .mmcif files.

Hi Miguel,

I don't really know either, but I find something strange :
- In Frame.java, currentGroupSequenceNumber is not explicitly initialized,
so it is equals to 0 at the beginning
- In Atom.java, sequenceNumber is explicitely initialized to
Integer.MIN_VALUE.

So, in Frame.addAtom(), startGroup() is always called if Atom.sequenceNumber
has not been initialized.

Nicolas