[Jmol-commits] CVS: Jmol/src/org/openscience/jmol/viewer/datamodel AminoMonomer.java,1.3,1.4 Monomer.java,1.6,1.7

[Miguel <mig...@us...>]

Update of /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer/datamodel
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13995/src/org/openscience/jmol/viewer/datamodel

Modified Files:
	AminoMonomer.java Monomer.java 
Log Message:
moved hbond offset support to AminoMonomer


Index: AminoMonomer.java
===================================================================
RCS file: /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer/datamodel/AminoMonomer.java,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- AminoMonomer.java	30 May 2004 01:13:34 -0000	1.3
+++ AminoMonomer.java	30 May 2004 08:56:28 -0000	1.4
@@ -139,4 +139,18 @@
   Point3f getCarbonylOxygenAtomPoint() {
     return getWingAtomPoint();
   }
+
+  ////////////////////////////////////////////////////////////////
+
+  short aminoBackboneHbondOffset = 0;
+
+  void setAminoBackboneHbondOffset(int aminoBackboneHbondOffset) {
+    this.aminoBackboneHbondOffset = (short)aminoBackboneHbondOffset;
+  }
+  
+  int getAminoBackboneHbondOffset() {
+    return aminoBackboneHbondOffset;
+  }
+
+
 }

Index: Monomer.java
===================================================================
RCS file: /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer/datamodel/Monomer.java,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- Monomer.java	30 May 2004 08:53:07 -0000	1.6
+++ Monomer.java	30 May 2004 08:56:28 -0000	1.7
@@ -38,8 +38,6 @@
   byte leadAtomOffset;
   byte wingAtomOffset = -1;
 
-  short aminoBackboneHbondOffset = 0;
-
   Monomer(Chain chain, String group3,
           int sequenceNumber, char insertionCode,
           int firstAtomIndex, int lastAtomIndex) {
@@ -219,14 +217,4 @@
     return "[" + getGroup3() + "-" + getSeqcodeString() + "]";
   }
 
-  ////////////////////////////////////////////////////////////////
-
-  void setAminoBackboneHbondOffset(int aminoBackboneHbondOffset) {
-    this.aminoBackboneHbondOffset = (short)aminoBackboneHbondOffset;
-  }
-  
-  int getAminoBackboneHbondOffset() {
-    return aminoBackboneHbondOffset;
-  }
-
 }