Re: [Jmol-developers] integration / mouse listeners

[Miguel <mi...@jm...>]

Andreas wrote:

>>>Is this the proper way to retreive this data?
>>>arghh ... NO=21
>>>
>>>
> oops ;-)
>
>  > Anything that you want *must* go through the JmolViewer.
>
>
> O.k. So all I need to know about is JmolViewer.java. Makes live easier.=

>
>
>  > I prefer to have them in a separate subdirectory because it is easie=
r
> to
>  > manager. But since people think that they are public then it looks l=
ike
> I
>  > need to move them all into the viewer directory and remove the 'publ=
ic'
>  > designations.
>
> hm. What about providing an Interface for JmolViewer? I guess if there
> would have been one in place, it would have stopped me from getting the=

> idea to try accessing data from lower levels...

Well, the JmolViewer was supposed to be the entry point. But I didn't mak=
e
that very clear.

You have made a very good suggestion. By defining a separate interface in=

the api directory (and making the existing JmolViewer an implementation o=
f
that interface) it would be more clear.

>
>  > > How can the insertion code be retreived?
>  >
>  > If the JmolViewer does not provide the information that you need the=
n
> we
>  > will add it.
>
>
> just did a test with e.g. 1h4w.  it seems that getAtomSequenceCode
> returns =22221=22, but not =22221A=22.
> Is there a separate method to get the insertion code for a residue?

Hmmm ... that sounds like a bug.

I think that I intended the insertion code to be part of the 'sequence co=
de'.

Will investigate.



Miguel