From: <all...@us...> - 2003-12-24 07:29:11
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Update of /cvsroot/gmod/schema/chado In directory sc8-pr-cvs1:/tmp/cvs-serv17481 Modified Files: README.H_sapiens Log Message: script name changes Index: README.H_sapiens =================================================================== RCS file: /cvsroot/gmod/schema/chado/README.H_sapiens,v retrieving revision 1.5 retrieving revision 1.6 diff -C2 -d -r1.5 -r1.6 *** README.H_sapiens 24 Dec 2003 07:17:35 -0000 1.5 --- README.H_sapiens 24 Dec 2003 07:29:08 -0000 1.6 *************** *** 36,40 **** directory. ! ./load/bin/load_gff3.pl --organism Human --srcdb 'DB:ucsc' --gfffile Hg16.chromosome.gff If you look at the data loaded into the feature table at this point, --- 36,40 ---- directory. ! ./load/bin/gmod_load_gff3.pl --organism Human --srcdb 'DB:ucsc' --gfffile Hg16.chromosome.gff If you look at the data loaded into the feature table at this point, *************** *** 53,57 **** > foreach i (*.fa) ? echo $i ! ? ./load/bin/load_gff3.pl --srcdb 'DB:ucsc' --organism Human --gfffile $i ? end > --- 53,57 ---- > foreach i (*.fa) ? echo $i ! ? ./load/bin/gmod_load_gff3.pl --srcdb 'DB:ucsc' --organism Human --gfffile $i ? end > *************** *** 67,71 **** Now load the GFF file as: ! ./load/bin/load_gff3.pl --organism Human --srcdb 'DB:genbank' --cache 10000 --gfffile Hg16.knownGene.gff This will take several hours to complete. --- 67,71 ---- Now load the GFF file as: ! ./load/bin/gmod_load_gff3.pl --organism Human --srcdb 'DB:genbank' --cache 10000 --gfffile Hg16.knownGene.gff This will take several hours to complete. *************** *** 78,83 **** and load the GFF files as: ! ./load/bin/load_gff3.pl --organism Human --srcdb 'DB:affy:U133' --cache 10000 --gfffile Hg16.U133.gff ! ./load/bin/load_gff3.pl --organism Human --srcdb 'DB:affy:U95' --cache 10000 --gfffile Hg16.U95.gff This may take a few hours to complete. --- 78,83 ---- and load the GFF files as: ! ./load/bin/gmod_load_gff3.pl --organism Human --srcdb 'DB:affy:U133' --cache 10000 --gfffile Hg16.U133.gff ! ./load/bin/gmod_load_gff3.pl --organism Human --srcdb 'DB:affy:U95' --cache 10000 --gfffile Hg16.U95.gff This may take a few hours to complete. |