Usage

USAGE

• USAGE
  • Web interface
  • Command line
    • gepetto
    • gepettoinput
    • gepettomodules
    • gepettoupdate
    • gepettoworkflow

Web interface

The procedure to use [GEPETTO] on SM2PH-Central website is described here.

Command line

gepetto

gepetto command is use to run genes or proteins prioritization where the input is respectively gene symbols or Uniprot accessions.

For further informations :

man gepetto

or

mangepetto gepetto

gepettoinput

gepettoinput command generates an input file formatted for the Java Spring framework using lists of genes or proteins contained in flat files.

man gepettoinput

or

mangepetto gepettoinput

gepettomodules

gepettomodules command returns the list of modules registered by GEPETTO.

man gepettomodules

or

mangepetto gepettomodules

gepettoupdate

gepettoupdate command is used to register modules by GEPETTO.

man gepettoupdate

or

mangepetto gepettoupdate

gepettoworkflow

gepettoworkflow command generates the JBPM workflow definition file in the BPMN2 format.

man gepettoworkflow

or

mangepetto gepettoworkflow