[Geneontology-annotation] [ geneontology-Annotation issues-2940879 ] problem with taxon rule for GO:0052085

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Annotation issues item #2940879, was opened at 2010-01-27 10:29
Message generated for change (Settings changed) made by jenclark
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Category: None
Group: None
>Status: Open
>Resolution: None
Priority: 5
Private: No
Submitted By: Emily Dimmer (edimmer)
Assigned to: Jennifer Deegan (jenclark)
Summary: problem with taxon rule for GO:0052085 

Initial Comment:
GO:0052085 "negative regulation by symbiont of host T-cell mediated immune response" only_in NCBITaxon:131567 "cellular organisms"

>From checking with Jane it appears that a symbiont can also be a virus, so this taxon rule should be removed

Cheers,
Emily

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>Comment By: Jennifer Deegan (jenclark)
Date: 2010-01-27 12:25

Message:
rethink...

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Comment By: Jennifer Deegan (jenclark)
Date: 2010-01-27 11:47

Message:
Hi,

I have removed this link:


[Term]
id: GO:0050896
name: response to stimulus
relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms

This does not hold true as viruses also respond to the stimuli produced by
their hosts. 

Thanks,

Jennifer

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Comment By: Emily Dimmer (edimmer)
Date: 2010-01-27 10:41

Message:
GO:0019065 receptor mediated endocytosis of virus by host

 It seems also that this term could also be correctly annotated to both
host and virus.

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Comment By: Emily Dimmer (edimmer)
Date: 2010-01-27 10:35

Message:
actually, this might be related to quite a few viral terms that have taxon
rules requiring them only to be applied to cellular organisms. All of the
following terms seem to be appropriate for viral protein annotation, yet
have a taxon rule requiring them only to be annotated to cellular
organisms.

 GO:0019064   	 viral envelope fusion with host membrane
	GO:0019068 	virion assembly
	GO:0019083 	viral transcription
	GO:0030683 	evasion by virus of host immune response
	GO:0046732 	active induction of host immune response by virus
	GO:0046776 	suppression by virus of host MHC class I cell surface
presentation
	GO:0046796 	viral genome transport in host cell
	GO:0052085 	negative regulation by symbiont of host T-cell mediated
immune response 

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