[Fink-users] Cannot install or update ppl9-0.11.2-5

[Emmanuel C. <emm...@ir...>]

Hi,

Running fink selfupdate and update-all today give me this error. I ran these commands 4 times after having set my max job to 1 with no success.

Hardware : MacBook Pro i7
OS : Mac OSX 10.8.5
Package manager version: 0.38.3
Distribution version: selfupdate-rsync Tue Dec 16 09:15:32 2014, 10.8, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  1

Many thanks for helping me.

Cheers,

….
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
# if you do not have the patience for the 'thorough' tests, --enable-check=quick
	# for ccache-default
	export CCACHE_SLOPPINESS=time_macros
	# regenerate ppl.hh first
	pushd src
/sw/src/fink.build/ppl9-0.11.2-5/ppl-0.11.2/build/src /sw/src/fink.build/ppl9-0.11.2-5/ppl-0.11.2/build
	make ppl.hh.gch
make  -C .. ppl-config.h
/sw/bin/sed -f ../ppl-config.sed config.h >ppl-config.h
for file in namespaces.hh compiler.hh assert.hh meta_programming.hh Slow_Copy.hh Has_Assign_Or_Swap.hh assign_or_swap.hh mp_std_bits.defs.hh mp_std_bits.inlines.hh Temp.defs.hh Temp.inlines.hh Temp.templates.hh Coefficient_traits_template.hh Checked_Number.types.hh GMP_Integer.types.hh Coefficient.types.hh stdiobuf.types.hh c_streambuf.types.hh globals.types.hh iterator_to_const.types.hh distances.types.hh Interval_Info.types.hh Interval.types.hh Box.types.hh Constraint.types.hh Generator.types.hh Grid_Generator.types.hh Congruence.types.hh Init.types.hh Row.types.hh Linear_Row.types.hh Matrix.types.hh Variable.types.hh Variables_Set.types.hh Linear_Expression.types.hh Linear_System.types.hh Bit_Row.types.hh Bit_Matrix.types.hh Constraint_System.types.hh Generator_System.types.hh Grid_Generator_System.types.hh Congruence_System.types.hh Scalar_Products.types.hh PIP_Tree.types.hh PIP_Problem.types.hh Poly_Con_Relation.types.hh Poly_Gen_Relation.types.hh BHRZ03_Certificate.types.hh H79_Certificate.types.hh Grid_Certificate.types.hh Partial_Function.types.hh Polyhedron.types.hh C_Polyhedron.types.hh NNC_Polyhedron.types.hh Grid.types.hh Ptr_Iterator.types.hh DB_Row.types.hh DB_Matrix.types.hh BD_Shape.types.hh OR_Matrix.types.hh Octagonal_Shape.types.hh fpu.types.hh Float.defs.hh Float.inlines.hh C_Integer.hh fpu.defs.hh fpu-c99.inlines.hh fpu-ia32.inlines.hh fpu-none.inlines.hh fpu-sparc.inlines.hh Rounding_Dir.defs.hh Rounding_Dir.inlines.hh Result.defs.hh Result.inlines.hh Numeric_Format.defs.hh checked.defs.hh checked.inlines.hh checked_int.inlines.hh checked_float.inlines.hh checked_mpz.inlines.hh checked_mpq.inlines.hh checked_ext.inlines.hh Checked_Number.defs.hh Checked_Number.inlines.hh Checked_Number.templates.hh WRD_coefficient_types.defs.hh WRD_coefficient_types.inlines.hh checked_numeric_limits.hh GMP_Integer.defs.hh GMP_Integer.inlines.hh Coefficient.defs.hh Coefficient.inlines.hh stdiobuf.defs.hh stdiobuf.inlines.hh c_streambuf.defs.hh c_streambuf.inlines.hh globals.defs.hh globals.inlines.hh math_utilities.defs.hh math_utilities.inlines.hh iterator_to_const.defs.hh iterator_to_const.inlines.hh distances.defs.hh distances.inlines.hh Boundary.defs.hh intervals.defs.hh Interval_Info.defs.hh Interval_Info.inlines.hh Interval_Restriction.defs.hh Interval.defs.hh Interval.inlines.hh Interval.templates.hh Box.defs.hh Box_Status.inlines.hh Box.inlines.hh Box.templates.hh Rational_Interval.hh Rational_Box.hh Variable.defs.hh Variable.inlines.hh Variables_Set.defs.hh Variables_Set.inlines.hh Init.defs.hh Init.inlines.hh initializer.hh Topology.hh Row.defs.hh Row.inlines.hh Linear_Row.defs.hh Linear_Row.inlines.hh Matrix.defs.hh Matrix.inlines.hh Bit_Row.defs.hh Bit_Row.inlines.hh Linear_System.defs.hh Linear_System.inlines.hh Bit_Matrix.defs.hh Bit_Matrix.inlines.hh Constraint_System.defs.hh Generator_System.defs.hh Grid_Generator_System.defs.hh Congruence_System.defs.hh Linear_Expression.defs.hh Linear_Expression.inlines.hh Constraint.defs.hh Constraint.inlines.hh Constraint_System.inlines.hh Generator.defs.hh Generator.inlines.hh Grid_Generator.defs.hh Grid_Generator.inlines.hh Congruence.defs.hh Congruence.inlines.hh Generator_System.inlines.hh Grid_Generator_System.inlines.hh Congruence_System.inlines.hh Scalar_Products.defs.hh Scalar_Products.inlines.hh MIP_Problem.types.hh MIP_Problem.defs.hh MIP_Problem.inlines.hh MIP_Problem.templates.hh PIP_Tree.types.hh PIP_Tree.defs.hh PIP_Tree.inlines.hh PIP_Problem.types.hh PIP_Problem.defs.hh PIP_Problem.inlines.hh PIP_Problem.templates.hh Poly_Con_Relation.defs.hh Poly_Con_Relation.inlines.hh Poly_Gen_Relation.defs.hh Poly_Gen_Relation.inlines.hh BHRZ03_Certificate.defs.hh BHRZ03_Certificate.inlines.hh H79_Certificate.defs.hh H79_Certificate.inlines.hh Grid_Certificate.defs.hh Grid_Certificate.inlines.hh Partial_Function.defs.hh Partial_Function.inlines.hh Polyhedron.defs.hh Ph_Status.inlines.hh Polyhedron.inlines.hh Polyhedron.templates.hh Grid.defs.hh Grid_Status.inlines.hh Grid.inlines.hh Grid.templates.hh C_Polyhedron.defs.hh C_Polyhedron.inlines.hh NNC_Polyhedron.defs.hh NNC_Polyhedron.inlines.hh Widening_Function.types.hh Widening_Function.defs.hh Widening_Function.inlines.hh Ptr_Iterator.defs.hh Ptr_Iterator.inlines.hh DB_Row.defs.hh DB_Row.inlines.hh DB_Row.templates.hh DB_Matrix.defs.hh DB_Matrix.inlines.hh DB_Matrix.templates.hh BD_Shape.defs.hh BDS_Status.inlines.hh BD_Shape.inlines.hh BD_Shape.templates.hh OR_Matrix.defs.hh OR_Matrix.inlines.hh OR_Matrix.templates.hh Octagonal_Shape.defs.hh Og_Status.inlines.hh Octagonal_Shape.inlines.hh Octagonal_Shape.templates.hh Determinate.types.hh Determinate.defs.hh Determinate.inlines.hh Powerset.types.hh Powerset.defs.hh Powerset.inlines.hh Powerset.templates.hh Pointset_Powerset.types.hh Pointset_Powerset.defs.hh Pointset_Powerset.inlines.hh Pointset_Powerset.templates.hh Partially_Reduced_Product.types.hh Partially_Reduced_Product.defs.hh Partially_Reduced_Product.inlines.hh Partially_Reduced_Product.templates.hh Weight_Profiler.defs.hh max_space_dimension.hh algorithms.hh termination.defs.hh termination.templates.hh wrap_assign.hh wrap_string.hh ; \
	do \
	  i="#include \"$file\"" ; \
	  ( cd ../../src ; /usr/bin/grep -F -q "$i" namespaces.hh compiler.hh assert.hh meta_programming.hh Slow_Copy.hh Has_Assign_Or_Swap.hh assign_or_swap.hh mp_std_bits.defs.hh mp_std_bits.inlines.hh Temp.defs.hh Temp.inlines.hh Temp.templates.hh Coefficient_traits_template.hh Checked_Number.types.hh GMP_Integer.types.hh Coefficient.types.hh stdiobuf.types.hh c_streambuf.types.hh globals.types.hh iterator_to_const.types.hh distances.types.hh Interval_Info.types.hh Interval.types.hh Box.types.hh Constraint.types.hh Generator.types.hh Grid_Generator.types.hh Congruence.types.hh Init.types.hh Row.types.hh Linear_Row.types.hh Matrix.types.hh Variable.types.hh Variables_Set.types.hh Linear_Expression.types.hh Linear_System.types.hh Bit_Row.types.hh Bit_Matrix.types.hh Constraint_System.types.hh Generator_System.types.hh Grid_Generator_System.types.hh Congruence_System.types.hh Scalar_Products.types.hh PIP_Tree.types.hh PIP_Problem.types.hh Poly_Con_Relation.types.hh Poly_Gen_Relation.types.hh BHRZ03_Certificate.types.hh H79_Certificate.types.hh Grid_Certificate.types.hh Partial_Function.types.hh Polyhedron.types.hh C_Polyhedron.types.hh NNC_Polyhedron.types.hh Grid.types.hh Ptr_Iterator.types.hh DB_Row.types.hh DB_Matrix.types.hh BD_Shape.types.hh OR_Matrix.types.hh Octagonal_Shape.types.hh fpu.types.hh Float.defs.hh Float.inlines.hh C_Integer.hh fpu.defs.hh fpu-c99.inlines.hh fpu-ia32.inlines.hh fpu-none.inlines.hh fpu-sparc.inlines.hh Rounding_Dir.defs.hh Rounding_Dir.inlines.hh Result.defs.hh Result.inlines.hh Numeric_Format.defs.hh checked.defs.hh checked.inlines.hh checked_int.inlines.hh checked_float.inlines.hh checked_mpz.inlines.hh checked_mpq.inlines.hh checked_ext.inlines.hh Checked_Number.defs.hh Checked_Number.inlines.hh Checked_Number.templates.hh WRD_coefficient_types.defs.hh WRD_coefficient_types.inlines.hh checked_numeric_limits.hh GMP_Integer.defs.hh GMP_Integer.inlines.hh Coefficient.defs.hh Coefficient.inlines.hh stdiobuf.defs.hh stdiobuf.inlines.hh c_streambuf.defs.hh c_streambuf.inlines.hh globals.defs.hh globals.inlines.hh math_utilities.defs.hh math_utilities.inlines.hh iterator_to_const.defs.hh iterator_to_const.inlines.hh distances.defs.hh distances.inlines.hh Boundary.defs.hh intervals.defs.hh Interval_Info.defs.hh Interval_Info.inlines.hh Interval_Restriction.defs.hh Interval.defs.hh Interval.inlines.hh Interval.templates.hh Box.defs.hh Box_Status.inlines.hh Box.inlines.hh Box.templates.hh Rational_Interval.hh Rational_Box.hh Variable.defs.hh Variable.inlines.hh Variables_Set.defs.hh Variables_Set.inlines.hh Init.defs.hh Init.inlines.hh initializer.hh Topology.hh Row.defs.hh Row.inlines.hh Linear_Row.defs.hh Linear_Row.inlines.hh Matrix.defs.hh Matrix.inlines.hh Bit_Row.defs.hh Bit_Row.inlines.hh Linear_System.defs.hh Linear_System.inlines.hh Bit_Matrix.defs.hh Bit_Matrix.inlines.hh Constraint_System.defs.hh Generator_System.defs.hh Grid_Generator_System.defs.hh Congruence_System.defs.hh Linear_Expression.defs.hh Linear_Expression.inlines.hh Constraint.defs.hh Constraint.inlines.hh Constraint_System.inlines.hh Generator.defs.hh Generator.inlines.hh Grid_Generator.defs.hh Grid_Generator.inlines.hh Congruence.defs.hh Congruence.inlines.hh Generator_System.inlines.hh Grid_Generator_System.inlines.hh Congruence_System.inlines.hh Scalar_Products.defs.hh Scalar_Products.inlines.hh MIP_Problem.types.hh MIP_Problem.defs.hh MIP_Problem.inlines.hh MIP_Problem.templates.hh PIP_Tree.types.hh PIP_Tree.defs.hh PIP_Tree.inlines.hh PIP_Problem.types.hh PIP_Problem.defs.hh PIP_Problem.inlines.hh PIP_Problem.templates.hh Poly_Con_Relation.defs.hh Poly_Con_Relation.inlines.hh Poly_Gen_Relation.defs.hh Poly_Gen_Relation.inlines.hh BHRZ03_Certificate.defs.hh BHRZ03_Certificate.inlines.hh H79_Certificate.defs.hh H79_Certificate.inlines.hh Grid_Certificate.defs.hh Grid_Certificate.inlines.hh Partial_Function.defs.hh Partial_Function.inlines.hh Polyhedron.defs.hh Ph_Status.inlines.hh Polyhedron.inlines.hh Polyhedron.templates.hh Grid.defs.hh Grid_Status.inlines.hh Grid.inlines.hh Grid.templates.hh C_Polyhedron.defs.hh C_Polyhedron.inlines.hh NNC_Polyhedron.defs.hh NNC_Polyhedron.inlines.hh Widening_Function.types.hh Widening_Function.defs.hh Widening_Function.inlines.hh Ptr_Iterator.defs.hh Ptr_Iterator.inlines.hh DB_Row.defs.hh DB_Row.inlines.hh DB_Row.templates.hh DB_Matrix.defs.hh DB_Matrix.inlines.hh DB_Matrix.templates.hh BD_Shape.defs.hh BDS_Status.inlines.hh BD_Shape.inlines.hh BD_Shape.templates.hh OR_Matrix.defs.hh OR_Matrix.inlines.hh OR_Matrix.templates.hh Octagonal_Shape.defs.hh Og_Status.inlines.hh Octagonal_Shape.inlines.hh Octagonal_Shape.templates.hh Determinate.types.hh Determinate.defs.hh Determinate.inlines.hh Powerset.types.hh Powerset.defs.hh Powerset.inlines.hh Powerset.templates.hh Pointset_Powerset.types.hh Pointset_Powerset.defs.hh Pointset_Powerset.inlines.hh Pointset_Powerset.templates.hh Partially_Reduced_Product.types.hh Partially_Reduced_Product.defs.hh Partially_Reduced_Product.inlines.hh Partially_Reduced_Product.templates.hh Weight_Profiler.defs.hh max_space_dimension.hh algorithms.hh termination.defs.hh termination.templates.hh wrap_assign.hh wrap_string.hh ) || echo "$i" ; \
	done > ppl_include_files.hh
make  -C ../utils build_header
/sw/bin/sed -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,[@]generated_automatically[@],Generated automatically: do not modify; modify the .in file instead.,g' < ../../utils/build_header.in > build_header
chmod +x build_header
../utils/build_header \
		-I .. -I ../src \
		../../src/ppl_header.hh >ppl.hh
g++ -DHAVE_CONFIG_H -I. -I../../src -I..  -I.. -I../../src  -I/Library/Java/JavaVirtualMachines/jdk1.7.0_71.jdk/Contents/Home/include -I/sw/include  -Winvalid-pch -g -O2  -g -O2 -pipe -fpch-preprocess -fPIC -W -Wall -xc++-header -DPIC -o ppl.hh.gch ppl.hh
ppl.hh:14386:15: error: flexible array member 'vec_' of type 'Coefficient []' with non-trivial destruction
  Coefficient vec_[
              ^
ppl.hh:31483:10: warning: class 'RAII_Temporary_Real_Relaxation' was previously declared as a struct
      [-Wmismatched-tags]
  friend class RAII_Temporary_Real_Relaxation;
         ^
ppl.hh:31468:10: note: previous use is here
  struct RAII_Temporary_Real_Relaxation {
         ^
ppl.hh:31483:10: note: did you mean struct here?
  friend class RAII_Temporary_Real_Relaxation;
         ^~~~~
         struct
ppl.hh:33972:64: warning: unused parameter 'to' [-Wunused-parameter]
diff_restriction(Interval_Restriction_Integer_Modulo<T, Base>& to,
                                                               ^
ppl.hh:33973:17: warning: unused parameter 'x' [-Wunused-parameter]
                 const From1& x, const From2& y) {
                              ^
ppl.hh:33973:33: warning: unused parameter 'y' [-Wunused-parameter]
                 const From1& x, const From2& y) {
                                              ^
ppl.hh:34514:54: warning: unused parameter 's' [-Wunused-parameter]
Interval_Info_Null<Policy>::ascii_dump(std::ostream& s) const {
                                                     ^
ppl.hh:34519:54: warning: unused parameter 's' [-Wunused-parameter]
Interval_Info_Null<Policy>::ascii_load(std::istream& s) {
                                                     ^
ppl.hh:35923:14: warning: unused variable 'ru' [-Wunused-variable]
      Result ru = Boundary_NS::assign(UPPER, upper(), info(),
             ^
ppl.hh:35933:14: warning: unused variable 'ru' [-Wunused-variable]
      Result ru = Boundary_NS::assign(UPPER, upper(), info(),
             ^
ppl.hh:35943:14: warning: unused variable 'rl' [-Wunused-variable]
      Result rl = Boundary_NS::assign(LOWER, lower(), info(),
             ^
ppl.hh:35953:14: warning: unused variable 'rl' [-Wunused-variable]
      Result rl = Boundary_NS::assign(LOWER, lower(), info(),
             ^
ppl.hh:54188:12: warning: unused variable 'vars_end' [-Wunused-variable]
           vars_end = vars.end(); i != vars.end(); ++i) {
           ^
11 warnings and 1 error generated.
make: *** [ppl.hh.gch] Error 1
### execution of /tmp/fink.zWWvO failed, exit code 2
### execution of /tmp/fink.p7wSd failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-ppl9-0.11.2-5
(Reading database ... 190538 files and directories currently installed.)
Removing fink-buildlock-ppl9-0.11.2-5 ...
Failed: phase compiling: ppl9-0.11.2-5 failed

Before reporting any errors, please run "fink selfupdate" and try again.

If you continue to have issues, please check to see if the FAQ on Fink's 
website solves the problem.  If not, ask on one (not both, please) of
these mailing lists:

	The Fink Users List <fin...@li...>
	The Fink Beginners List <fin...@li...>,

with a carbon copy to the maintainer:

	David Fang <fa...@us...>

Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.

Please try to include the complete error message in your report.  This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.

Also include the following system information:
Package manager version: 0.38.3
Distribution version: selfupdate-rsync Tue Dec 16 09:15:32 2014, 10.8, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 5.1.0.0.1.1396320587
Max. Fink build jobs:  1

[Emmanuels-MacBook-Pro:~] caux% 
!! PLEASE NOTE MY NEW EMAIL ADDRESS !!

--------------------------------------------------------------
Emmanuel Caux, emm...@ir...
DR2 CNRS   -   Departement MICMAC
Institut de Recherche en Astrophysique et Planétologie
(IRAP formerly CESR)
BP 44346, 31028 Toulouse Cedex 4, France
Phone : (+33) 561 556 689
Fax :       (+33) 561 556 651
--------------------------------------------------------------