Re: [Fink-beginners] Problem compiling wise2.2

[hari j. <ha...@gm...>]

I was compiling the package on Mac OSX 10.5.2 leopard

Darwin mango.biochem.brandeis.edu 9.2.2 Darwin Kernel Version 9.2.2: Tue
Mar  4 21:17:34 PST 2008; root:xnu-1228.4.31~1/RELEASE_I386 i386 i386

The package is part of biopython (biopython-py25) and is called " wise2
2.2.0-3                                     Intelligent algorithms for DNA"

The error I get is
unlimit: stacksize: Can't remove limit (Invalid argument)
> make[1]: *** [bin] Error 1
> make: *** [all] Error 2
> ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2

Which seems to be caused by the fact that in the Leopard supplied unlimit
csh . calling just unlimit echoes the error
unlimit: descriptors: Can't remove limit (Invalid argument)
Regardless , I contacted the program maintainer and he suggested it might be
a fink sepecific error. I also got the package downloaded from the wise2
website to build just fine

Please can someone tell me how to get around wise2's failure to install and
this compile error

Thank you
Hari


> make[1]: *** [bin] Error 1
> make: *** [all] Error 2
> ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2On Mon, May 19,
2008 at 8:16 PM, Alexander K Hansen <ale...@gm...> wrote:

> On Monday 19 May 2008 18:45:04 hari jayaram wrote:
> > Hi when I was trying to install the biopython suite
> > I get the following
> > error when fink tries to install the wise program
> >
> > unlimit: stacksize: Can't remove limit (Invalid argument)
> > make[1]: *** [bin] Error 1
> > make: *** [all] Error 2
> > ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2
> >
> >
> > I did contact the writer of the program and he said it seems to be a fink
> > specific issue
> >
> > Also I could separately download and build the program wise 2.2.0.3 from
> > the wise website and install it in my home directory just fine
> >
> > Please can someone tell me how to proceed.
> > thanks for your help
> > Hari
> >
> >
> >
> >
> >
> >
> > mv models/pswdb models/psw models/genewisedb models/estwisedb
> > models/estwise models/genewise models/dba models/dnal models/genomewise
> > ./bin
> > csh welcome.csh
> > unlimit: stacksize: Can't remove limit (Invalid argument)
> > make[1]: *** [bin] Error 1
> > make: *** [all] Error 2
> > ### execution of /var/tmp/tmp.1.t6Sfqg failed, exit code 2
>
> What architecture and OS are you on?
>