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Re: [cml/ccml-discuss] Fwd: another CML 2.3 RC1 problem
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From: peter murray-r. <pm...@ca...> - 2006-12-13 21:34:13
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At 20:03 13/12/2006, Egon Willighagen wrote:
>I checked in only at schema25:
Egon, please change anything that you feel suitable and fits the spec.
>$ cvs commit -m "Added missing @start and @end attribs (as given in the
>CMLSpec article, needs verification by PMR)" array.xsd
>Checking in array.xsd;
>/cvsroot/cml/schema25/elements/array.xsd,v <-- array.xsd
>new revision: 1.3; previous revision: 1.2
>done
>$ cvs commit -m "Added missing parameterList and substanceList as possible
>childs (as stated in the CMLSpec article)" spectrum.xsd
>Checking in spectrum.xsd;
>/cvsroot/cml/schema25/elements/spectrum.xsd,v <-- spectrum.xsd
>new revision: 1.3; previous revision: 1.2
>done
Thanks
>$ cvs commit -m "Three more examples from the CMLSpec article"
>cvs commit: Examining .
>RCS file: /cvsroot/cml/schema25/examples/complex/spectrum5.xml,v
>done
>Checking in spectrum5.xml;
>/cvsroot/cml/schema25/examples/complex/spectrum5.xml,v <-- spectrum5.xml
>initial revision: 1.1
>done
>RCS file: /cvsroot/cml/schema25/examples/complex/spectrum6.xml,v
>done
>Checking in spectrum6.xml;
>/cvsroot/cml/schema25/examples/complex/spectrum6.xml,v <-- spectrum6.xml
>initial revision: 1.1
>done
>RCS file:=
/cvsroot/cml/schema25/examples/complex/spectrum_and_structure3.xml,v
>done
>Checking in spectrum_and_structure3.xml;
>/cvsroot/cml/schema25/examples/complex/spectrum_and_structure3.xml,v <--
>spectrum_and_structure3.xml
>initial revision: 1.1
>done
>
>
> > The main check on correctness of schema is thus:
> > * autogenerating JUMBO
> > * running JUMBO over examples.
>
>OK, can't get that working:
I'll try tomorrow
>$ ant
>Buildfile: build.xml
>
>compileAll:
>
>compileEuclid:
> [echo] COMPILING EUCLID
> [javac] Compiling 38 source files
>to /home/egonw/var/Projects/SourceForge/CML/jumbo53/bin
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Eucl=
idConstants.java:54:=20
>
>warning: unmappable character for encoding UTF8
> [javac] char C_POUND =3D '=EF=BF=BD';
> [javac] ^
I removed this - its seems to have come back from sourceforge
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Eucl=
idConstants.java:178:=20
>
>warning: unmappable character for encoding UTF8
> [javac] String S_POUND =3D "=EF=BF=BD";
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Eucl=
idConstants1.java:63:=20
>
>warning: unmappable character for encoding UTF8
> [javac] public final static String S_POUND =3D "=EF=BF=BD";
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:28:=20
>
>package org.xmlcml.cml.base does not exist
> [javac] import org.xmlcml.cml.base.CMLRuntimeException;
> [javac] ^
>
This is obviously a bug. It should be EuclidRuntimeException
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:29:=20
>
>package org.xmlcml.cml.base does not exist
> [javac] import org.xmlcml.cml.base.CMLUtil;
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:30:=20
>
>package org.xmlcml.cml.base.CMLUtil does not exist
> [javac] import org.xmlcml.cml.base.CMLUtil.Message;
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:55:=20
>
>cannot find symbol
> [javac] symbol : class CMLRuntimeException
> [javac] location: class org.xmlcml.euclid.Util
> [javac] throw new CMLRuntimeException("Cannot create
>temporary directory : "
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:75:=20
>
>cannot find symbol
> [javac] symbol : class CMLRuntimeException
> [javac] location: class org.xmlcml.euclid.Util
> [javac] throw new CMLRuntimeException("Cannot create
>temporary class directory : "
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:131:=20
>
>cannot find symbol
> [javac] symbol : class CMLRuntimeException
> [javac] location: class org.xmlcml.euclid.Util
> [javac] throw new CMLRuntimeException("BUG: "+msg+"should=
never
>throw", e);
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:150:=20
>
>cannot find symbol
> [javac] symbol : class CMLRuntimeException
> [javac] location: class org.xmlcml.euclid.Util
> [javac] throw new CMLRuntimeException(Message.NYI.value);
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:150:=20
>
>package Message does not exist
> [javac] throw new CMLRuntimeException(Message.NYI.value);
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:208:=20
>
>cannot find symbol
> [javac] symbol : class CMLRuntimeException
> [javac] location: class org.xmlcml.euclid.Util
> [javac] throw new CMLRuntimeException("No resource=
with
>name " + filename);
> [javac] ^
>
>[javac]=20
>/home/egonw/var/Projects/SourceForge/CML/jumbo53/src/org/xmlcml/euclid/Util=
.java:222:=20
>
>cannot find symbol
> [javac] symbol : class CMLUtil
> [javac] location: class org.xmlcml.euclid.Util
> [javac] File f =3D new File(CMLUtil.class.getClassLoader()
> [javac] ^
> [javac] 10 errors
> [javac] 3 warnings
>
>I'll try again.
These are all strange
>BUILD FAILED
>
>Where did that fix for those non-ASCII chars go?? Am I working at the right
>spot?
I think so!
> > I know there are one or two glitches (trow was superseded by
> > tableRow, but the old example still seems to be in SF). I think that
> > start and end attributes may have got deleted - I will check. I will
> > also fix the validation failure to throw a fail rather than simply emit
> > syserr.
> >
> > This is the first time I have actively supported both a release jar
> > and continued to develop and so it's easy to get muddled. Are there
> > any useful tools to help maintain consistency for simple bugfixes?
>
>Maybe I should revert these changes... please advice...
Egon - I suggest you try and make it work at your=20
end. We are clearly fighting CVS (which is why we=20
changed to SVN). The spec defines the schema=20
which defines the examples which validate the code.
P.
>Egon
>
>--
>CUBIC
>blog: http://chem-bla-ics.blogspot.com/
Peter Murray-Rust
Unilever Centre for Molecular Sciences Informatics
University of Cambridge,
Lensfield Road, Cambridge CB2 1EW, UK
+44-1223-763069=20
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