[Cdk-devel] some IBioPolymer questions

[Rajarshi G. <rg...@in...>]

Hi, I'm using ProteinBuilderTool to create a peptide sequence like

BioPolymer pepseq = ProteinBuilderTool.createProtein("ACDEFGH");

However, when I do

Collection aas = peptide.getMonomerNames();

and then print out the monomer names I get an extra blank entry. Is this
supposed to be the case?

Also, in such a sequence is there any way to determine the C-terminal
and N-terminal residues? Or is it always the case that the left most
residue (i.e., element 0 in the monomer list) the N-terminal and the
last one the C-terminal?

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Rajarshi Guha <rg...@in...>
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Accuracy, n.:
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