Re: [Cdk-user] latest CDKJMolAdapter?

[Nina J. <ni...@ac...>]

"Egon Willighagen" <e.w...@sc...> wrote:

> > I got one from Bioclipse SVN, but without much success in using it...
> 
> That's the most up to date one. What are the errors you get?
> 

Well, the initial error is a compile one, since it requires getModelIndex
method, which does not exist in the SVN file.

---
The type CdkJmolAdapter.StructureIterator must implement the inherited
abstract method JmolAdapter.StructureIterator.getModelIndex
---

Not sure what getModelIndex should do, apparently my first guess is far from
the truth
		public int getModelIndex() {
			return 0;
		}
		
since with this implementation the viewer doesn't work properly:

viewer.setIntProperty(_version,1101050) - integer variable defined
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty
"auxiliaryInfo" to inspect them.
java.lang.NullPointerException
	at org.jmol.modelset.ModelLoader.iterateOverAllNewModels(Unknown Source)
	at org.jmol.modelset.ModelLoader.initializeModelSet(Unknown Source)
	at org.jmol.modelset.ModelLoader.<init>(Unknown Source)
	at org.jmol.modelset.ModelManager.setClientFile(Unknown Source)
	at org.jmol.viewer.Viewer.openClientFile(Unknown Source)


Thanks for the help,
Nina

> Egon
> 
> 
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