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[Cdk-commits] [cdk/cdk] ed84b2: Account for stroke widths in bounds calculation.
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From: GitHub <no...@gi...> - 2015-10-11 07:55:12
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Branch: refs/heads/master Home: https://github.com/cdk/cdk Commit: ed84b253bf788344793596269c7fa0c8333e0762 https://github.com/cdk/cdk/commit/ed84b253bf788344793596269c7fa0c8333e0762 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/Bounds.java Log Message: ----------- Account for stroke widths in bounds calculation. Commit: 7f8a97c115b7e1ab5d848128572838e7b3978fbf https://github.com/cdk/cdk/commit/7f8a97c115b7e1ab5d848128572838e7b3978fbf Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/BasicSceneGenerator.java Log Message: ----------- Title depiction in reaction display. Commit: 816b8b36c7c6de8169717223f061dba8aa686eca https://github.com/cdk/cdk/commit/816b8b36c7c6de8169717223f061dba8aa686eca Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/render/src/main/java/org/openscience/cdk/renderer/SymbolVisibility.java M display/render/src/test/java/org/openscience/cdk/renderer/SymbolVisibilityTest.java Log Message: ----------- We should always display carbon atom symbols for ethane. Commit: 39304aab243953b6af398a73fa19c55b4dc5697f https://github.com/cdk/cdk/commit/39304aab243953b6af398a73fa19c55b4dc5697f Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabel.java M display/renderbasic/src/test/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabelTest.java Log Message: ----------- Minor space optimisation in trie and don't fail on non-ascii characters. Commit: e7600bb563bbe31855b74ea1a0ea18ad06f8b7da https://github.com/cdk/cdk/commit/e7600bb563bbe31855b74ea1a0ea18ad06f8b7da Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabel.java Log Message: ----------- Less clear than sec- and tert-, but n (norm) should also be italics. Commit: f90305cabae0c0b4a8a6310b0471068d95b11582 https://github.com/cdk/cdk/commit/f90305cabae0c0b4a8a6310b0471068d95b11582 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/MolGridDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java Log Message: ----------- Use IDrawVisitor interface. Commit: 2d9350247724894d9316b8debfc58ff5e05d98bc https://github.com/cdk/cdk/commit/2d9350247724894d9316b8debfc58ff5e05d98bc Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: A display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/MarkedElement.java Log Message: ----------- A simple wrapper element that allows us to set id and class attributes. Commit: 3e0a2e2e681875d4599485d07ccaf66b1a02abfa https://github.com/cdk/cdk/commit/3e0a2e2e681875d4599485d07ccaf66b1a02abfa Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderawt/src/main/java/org/openscience/cdk/renderer/visitor/AWTDrawVisitor.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/Bounds.java Log Message: ----------- Visit the children of marked elements in methods that need to traverse the scene. Commit: d7f17393041bbd916b3c4cf8ef86110ace74751f https://github.com/cdk/cdk/commit/d7f17393041bbd916b3c4cf8ef86110ace74751f Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/BasicAtomGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/BasicBondGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardBondGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardGenerator.java Log Message: ----------- Marking elements in the core basic/standard generators. Commit: 54b9e2c0d35b0e79e321e833db0cc8f6b9f70838 https://github.com/cdk/cdk/commit/54b9e2c0d35b0e79e321e833db0cc8f6b9f70838 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java Log Message: ----------- Automatically set the mol/atom/bond ids and classes if the user hasn't provided them. Commit: 7d1c1c0a06fb24e09df3c2d21a6e8267c08f9ff4 https://github.com/cdk/cdk/commit/7d1c1c0a06fb24e09df3c2d21a6e8267c08f9ff4 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java A app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java A app/depict/src/test/java/org/openscience/cdk/depict/SvgDrawVisitorTest.java Log Message: ----------- Improved SVG output ~50% smaller than going through Graphics2D and include marked elements. Commit: a09d9bd92450f7cde6ac600be39eb423454c1d84 https://github.com/cdk/cdk/commit/a09d9bd92450f7cde6ac600be39eb423454c1d84 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/MolGridDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java Log Message: ----------- Background rectangle should be filled. Commit: 93e6a9d3b8184531e1322852e5d7acbc32f16864 https://github.com/cdk/cdk/commit/93e6a9d3b8184531e1322852e5d7acbc32f16864 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java Log Message: ----------- Relative paths are more space efficient. Commit: 9766d0ae76c408f093487f8d725466c056a49c79 https://github.com/cdk/cdk/commit/9766d0ae76c408f093487f8d725466c056a49c79 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java M display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java Log Message: ----------- Option to disable id and class tags in SVG due to perhaps undesirable overhead. Commit: 820e29be2aa20b51aa04d486468634f523f7d37d https://github.com/cdk/cdk/commit/820e29be2aa20b51aa04d486468634f523f7d37d Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/Depiction.java M app/depict/src/main/java/org/openscience/cdk/depict/MolGridDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java Log Message: ----------- Doing a preliminary traversal of the scene allows us to write more optimal SVG output. Transformed paths (planned) could also be handled here. Commit: 750a135977d699097c1e329a1c5e0e328c7c7e8e https://github.com/cdk/cdk/commit/750a135977d699097c1e329a1c5e0e328c7c7e8e Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java Log Message: ----------- Correct deltas for optimising horizontal/vertical lines. Commit: f032367fd9468120e8c5de44ba01a0b82de72ddd https://github.com/cdk/cdk/commit/f032367fd9468120e8c5de44ba01a0b82de72ddd Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabel.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java M display/renderbasic/src/test/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabelTest.java Log Message: ----------- Format disconnect abbreviations and handle Fe(acac)3. We need the atom generator for formatting or could move the method out of that class. Commit: 259246810e07304471c96dd8958fba63d41ab98e https://github.com/cdk/cdk/commit/259246810e07304471c96dd8958fba63d41ab98e Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/MarkedElement.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java Log Message: ----------- Allows marked elements to take a null chemobj, we can then tag abbreviations as atoms. Commit: f4e7ebce03ec7a07b73c056de3040d5a12f65533 https://github.com/cdk/cdk/commit/f4e7ebce03ec7a07b73c056de3040d5a12f65533 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/MolGridDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java Log Message: ----------- Need transform to draw rectangle in AWT. Commit: 90c882fb5ba16bf1423dd0b82f7f258422940b73 https://github.com/cdk/cdk/commit/90c882fb5ba16bf1423dd0b82f7f258422940b73 Author: John May <jo...@ne...> Date: 2015-10-01 (Thu, 01 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java Log Message: ----------- MolId needs to be set. Commit: f84746d3a28f4fc72fe80742ef38d62487ddd285 https://github.com/cdk/cdk/commit/f84746d3a28f4fc72fe80742ef38d62487ddd285 Author: John May <jo...@ne...> Date: 2015-10-06 (Tue, 06 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java Log Message: ----------- Generic list should accept atom and bond lists. Commit: 6155e3ee2250ec2afd371393d0b573f802833dd0 https://github.com/cdk/cdk/commit/6155e3ee2250ec2afd371393d0b573f802833dd0 Author: John May <jo...@ne...> Date: 2015-10-06 (Tue, 06 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/MolGridDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java Log Message: ----------- Correct handling of background rectangles. Commit: 305aaf311a943cd8ca3b1fdcc2b4a445b2d3a491 https://github.com/cdk/cdk/commit/305aaf311a943cd8ca3b1fdcc2b4a445b2d3a491 Author: John May <jo...@ne...> Date: 2015-10-06 (Tue, 06 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java Log Message: ----------- Convenience parameter options in the depiction generator. Commit: fddbdc58dcc0e3aaab39d022cb98317bcf9b62eb https://github.com/cdk/cdk/commit/fddbdc58dcc0e3aaab39d022cb98317bcf9b62eb Author: John May <jo...@ne...> Date: 2015-10-06 (Tue, 06 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardGenerator.java Log Message: ----------- Show ovals for outerglow - also realised the SVG element is ellipse instead of oval. Commit: 7e2a3d5dfa1d394601b118ba0557c62d42133c31 https://github.com/cdk/cdk/commit/7e2a3d5dfa1d394601b118ba0557c62d42133c31 Author: Egon Willighagen <ego...@gm...> Date: 2015-10-11 (Sun, 11 Oct 2015) Changed paths: M app/depict/src/main/java/org/openscience/cdk/depict/Depiction.java M app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java M app/depict/src/main/java/org/openscience/cdk/depict/MolGridDepiction.java M app/depict/src/main/java/org/openscience/cdk/depict/ReactionDepiction.java A app/depict/src/main/java/org/openscience/cdk/depict/SvgDrawVisitor.java A app/depict/src/test/java/org/openscience/cdk/depict/SvgDrawVisitorTest.java M display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java M display/render/src/main/java/org/openscience/cdk/renderer/SymbolVisibility.java M display/render/src/test/java/org/openscience/cdk/renderer/SymbolVisibilityTest.java M display/renderawt/src/main/java/org/openscience/cdk/renderer/visitor/AWTDrawVisitor.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/Bounds.java A display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/MarkedElement.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/BasicAtomGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/BasicBondGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/BasicSceneGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabel.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardBondGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardGenerator.java M display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java M display/renderbasic/src/test/java/org/openscience/cdk/renderer/generators/standard/AbbreviationLabelTest.java Log Message: ----------- Merge pull request #163 from cdk/feature/depict Feature/depict Part 3 - SVG Compare: https://github.com/cdk/cdk/compare/5902bf112f28...7e2a3d5dfa1d |