From: John M. <joh...@gm...> - 2012-10-15 15:47:37
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Hi Ralf, > Test file is attached. I can't find it - maybe the lists removed could you try sending directly. Thanks, J On 15 Oct 2012, at 16:10, ra...@ar... wrote: > On Mon, Oct 15, 2012 at 04:33:14PM +0200, Egon Willighagen wrote: >> What is the code you are using, and the full stacktrace? > > The usual code opening a smiles file. It crashes now with ANY smiles > file. Why don't you first confirm the case with your tools? Testing > output is to be distrusted, as was proven with the CML bug. > > https://github.com/JChemPaint/jchempaint/blob/master/src/main/org/openscience/jchempaint/application/JChemPaint.java#L434 > > Instantly the following trace is given but the actual point is > an NPE somewhat earlier, and I have given that already. > > org.openscience.cdk.exception.CDKException: Structure does not have > bonds or atoms. Cannot depict structure. > at > org.openscience.jchempaint.application.JChemPaint.cleanUpChemModel(JChemPaint.java:345) > at > org.openscience.jchempaint.application.JChemPaint.readFromFileReader(JChemPaint.java:287) > at > org.openscience.jchempaint.action.OpenAction.actionPerformed(OpenAction.java:103) > > > ------------------------------------------------------------------------------ > Don't let slow site performance ruin your business. Deploy New Relic APM > Deploy New Relic app performance management and know exactly > what is happening inside your Ruby, Python, PHP, Java, and .NET app > Try New Relic at no cost today and get our sweet Data Nerd shirt too! > http://p.sf.net/sfu/newrelic-dev2dev > _______________________________________________ > Cdk-devel mailing list > Cdk...@li... > https://lists.sourceforge.net/lists/listinfo/cdk-devel |