Re: AW: AW: [Cdk-user] CDK and Taverna

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Hmm, maybe something went wrong during the download?

If you have downloaded things on windows you really have to rename the=20
files to .jar and then copy into the lib. I got the files via linux so=20
there was no renaming for me. Did you rename directly after downloading os =

was there any windows mechanism applied in between? Sorry, but I am not a=20
windows guru and have no idea if windows does anything to the files ...

Maybe some simple tests:

What is the file size of the cdk-taverna.jar? If you copy it somewhere and =

rename it to zip and have a look inside, can you find something called=20
apiconsumer.xml in the root directory?

Best,
Nik

Smitha Ajay <smitha=5F...@ya...>
Sent by: cdk...@li...
25.03.2006 22:40

=20
        To:     Nikolaus Stiefl/PH/Novartis@PH, Thomas Kuhn <tho.kuhn@web.d=
e>
        cc:     cdk...@li..., cdk...@li...urce=
forge.net,=20
"'Smitha Ajay'" <smitha=5F...@ya...>
        Subject:        Re: AW: AW: [Cdk-user] CDK and Taverna
        Category:=20

Hi Nik,

I had the old jar files of course and took the latest
cdk and cdk-taverna files from the other site that you
had pointed me to.

But now the CDK WSDL's do not  appear at all when i
start up Taverna.

No clue why.However, the latest files were zip files
and not jar files ...would that matter?I tried
renaming them to jar files but no luck.

Any help?

Thanks
Smitha

--- nik...@no... wrote:

> Hi Smitha,
>=20
> just to make sure that you are getting files from
> the right directories=20
> ...
>=20
> Did you download the files from:
>=20
>
http://sourceforge.net/project/showfiles.php?group=5Fid=3D20024&package=5Fi=
d=3D166755
>=20
> or from:
>=20
>
http://cvs.sourceforge.net/viewcvs.py/cdk/cdk-taverna/
>=20
> Make sure that you are using the second possibility,
> otherwise you will=20
> not be working with the latest files ...
>=20
> Best,
> Nik
>=20
>=20
>=20
>=20
>=20
>=20
> "Thomas Kuhn" <tho...@we...>
> Sent by: cdk...@li...
> 24.03.2006 08:45
>=20
>=20
>         To:     "'Smitha Ajay'"
> <smitha=5F...@ya...>
>         cc:     <cdk...@li...>,
> (bcc: Nikolaus Stiefl/PH/Novartis)
>         Subject:        AW: AW: [Cdk-user] CDK and
> Taverna
>         Category:=20
>=20
>=20
>=20
> Hi Smitha,
>=20
> I think there are problems with the different
> versions of the cdk and
> cdk-taverna.=20
> The best thing I would predict is to wait until
> Monday, because I will
> release a new CDK-Taverna version than. And
> hopefully this will work!=20
>=20
> Only for information, what version of Taverna do you
> use and what Java
> version?
>=20
> Cheers,
> Thomas
>=20
> > -----Urspr=FCngliche Nachricht-----
> > Von: cdk...@li...
> [mailto:cdk-user-
> > ad...@li...] Im Auftrag von Smitha
> Ajay
> > Gesendet: Donnerstag, 23. M=E4rz 2006 14:37
> > An: cdk...@li...
> > Betreff: Re: AW: [Cdk-user] CDK and Taverna
> >=20
> > Hi Thomas,
> >=20
> > 1)I use Windows XP
> > 2)I did delete jmol.jar and have copied the cdk
> jar
> > file as well into the Taverna lib directory
> > 3)I downloaded the latest cdk-taverna.jar from the
> cdk
> > web site.
> >=20
> > Any ideas why it may still not be working?
> >=20
> > Thanks again
> > Smitha
> >=20
> > --- Thomas Kuhn <tho...@we...> wrote:
> >=20
> > > Hallo Smitha,
> > >
> > > which OS do you use? If you try to run it under
> > > linux delete the jmol.jar
> > > within the lib directory of your Taverna
> > > installation. This causes an
> > > unsolved problem with the cdk because the cdk
> > > includes jmol too.
> > > Which java version do you have installed?
> > > Did you also copy the cdk.jar into the lib
> > > directory?
> > > From where did you download the cdk-taverna.jar?
> > >
> > > Thomas
> > >
> > > > -----Urspr=FCngliche Nachricht-----
> > > > Von: cdk...@li...
> > > [mailto:cdk-user-
> > > > ad...@li...] Im Auftrag von
> Smitha
> > > Ajay
> > > > Gesendet: Donnerstag, 23. M=E4rz 2006 00:02
> > > > An: cdk...@li...
> > > > Betreff: [Cdk-user] CDK and Taverna
> > > >
> > > > I am trying to use the CDK web services
> provided
> > > by
> > > > cdk-taverna.jar in Taverna.
> > > >
> > > > I added the jar file in T averna lib and got
> the
> > > list
> > > > of WSDLs in Taverna.
> > > >
> > > > However when i tried to invoke any of those
> web
> > > > services i get an error.
> > > >
> > > > For instance i tried the 'parseSMILES' and
> gave a
> > > > smile file as input and when i ran the
> workflow, i
> > > got
> > > > an error in SmilesTOoks.parseSMILES() : line
> 49...
> > > >
> > > > Any clue as to how to make these run
> > > > successfully?Anyone had luck running them
> > > > successfully?
> > > >
> > > > Thanks
> > > > Smitha
> > > >
> > > >
> =5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=
=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=
=5F
> > > > Do You Yahoo!?
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> > > Cdk-user mailing list
> > > Cdk...@li...
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> >=20
> > =5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=
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This SF.Net email is sponsored by xPML, a groundbreaking scripting=20
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