From: Christoph S. <c.s...@un...> - 2004-07-09 10:32:10
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Could be a problem with one of the CDK libraries. Go to your cdk/jar directory and check if your printf.jar is ok, e.g. by=20 doing "jar -tvf printf.jar". Cheers, Chris Martin Eklund wrote: > Hi, >=20 > I'm having some problems with the PDBWriter. When I run the following > code: >=20 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > FileWriter writer =3D null; > try { > writer =3D new FileWriter("/home/mek/workspace/coffeine.pdb"); > } catch (IOException e4) { > e4.printStackTrace(); > } > PDBWriter pdbWriter =3D new PDBWriter(writer); > try { > pdbWriter.writeMolecule(molecule); > } catch (CDKException e3) { > e3.printStackTrace(); > } > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D >=20 > I get the following run-time error: >=20 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Exception in thread "main" java.lang.NoClassDefFoundError: > freeware/PrintfFormat > at org.openscience.cdk.io.PDBWriter.writeMolecule(PDBWriter.java:107) > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D >=20 > As my Java not is what it should be, it could well be an error on my > part...but NoClassDefFoundError sounds like it implies that my CLASSPAT= H > is wrong, which I'm pretty sure it isn't, or something along those > lines... >=20 > Would be thankful for any ideas! >=20 > Cheers! >=20 > Martin. >=20 --=20 Dr. rer. nat. habil. Christoph Steinbeck (c.s...@un...) Groupleader Junior Research Group for Applied Bioinformatics Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de) Z=FClpicher Str. 47, 50674 Cologne Tel: +49(0)221-470-7426 Fax: +49 (0) 221-470-7786 What is man but that lofty spirit - that sense of enterprise. ... Kirk, "I, Mudd," stardate 4513.3.. |