[Cdk-user] PDBWriter problem

[Martin E. <mar...@lc...>]

Hi,

I'm having some problems with the PDBWriter. When I run the following
code:

=====================================================================
FileWriter writer = null;
try {
	writer = new FileWriter("/home/mek/workspace/coffeine.pdb");
} catch (IOException e4) {
	e4.printStackTrace();
}
PDBWriter pdbWriter = new PDBWriter(writer);
try {
	pdbWriter.writeMolecule(molecule);
} catch (CDKException e3) {
	e3.printStackTrace();
}
======================================================================

I get the following run-time error:

======================================================================
Exception in thread "main" java.lang.NoClassDefFoundError:
freeware/PrintfFormat
	at org.openscience.cdk.io.PDBWriter.writeMolecule(PDBWriter.java:107)
======================================================================

As my Java not is what it should be, it could well be an error on my
part...but NoClassDefFoundError sounds like it implies that my CLASSPATH
is wrong, which I'm pretty sure it isn't, or something along those
lines...

Would be thankful for any ideas!

Cheers!

Martin.

-- 
========================================
Martin Eklund
PhD Student
Department of Pharmaceutical Biosciences
Linnaeus Centre for Bioinformatics
Uppsala University, Sweden
Ph: +46-18-4716681
========================================