[Cdk-commits] [cdk/cdk] 78fb9c: Implemented the silent module as a nonotify replac...

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  Branch: refs/heads/master
  Home:   https://github.com/cdk/cdk

  Commit: 78fb9c8d1bdce08d454dd8a1ca61252338a0864e
      https://github.com/cdk/cdk/commit/78fb9c8d1bdce08d454dd8a1ca61252338a0864e
  Author: Egon Willighagen <eg...@us...>
  Date:   2011-09-16 (Fri, 16 Sep 2011)

  Changed paths:
    M build.xml
  A src/META-INF/silent.cdkdepends
  A src/META-INF/silent.libdepends
  A src/META-INF/test-silent.cdkdepends
  A src/META-INF/test-silent.devellibdepends
  A src/META-INF/test-silent.libdepends
  A src/main/org/openscience/cdk/silent/AdductFormula.java
  A src/main/org/openscience/cdk/silent/AminoAcid.java
  A src/main/org/openscience/cdk/silent/Atom.java
  A src/main/org/openscience/cdk/silent/AtomContainer.java
  A src/main/org/openscience/cdk/silent/AtomContainerSet.java
  A src/main/org/openscience/cdk/silent/AtomParity.java
  A src/main/org/openscience/cdk/silent/AtomType.java
  A src/main/org/openscience/cdk/silent/BioPolymer.java
  A src/main/org/openscience/cdk/silent/Bond.java
  A src/main/org/openscience/cdk/silent/ChemFile.java
  A src/main/org/openscience/cdk/silent/ChemModel.java
  A src/main/org/openscience/cdk/silent/ChemObject.java
  A src/main/org/openscience/cdk/silent/ChemSequence.java
  A src/main/org/openscience/cdk/silent/Crystal.java
  A src/main/org/openscience/cdk/silent/ElectronContainer.java
  A src/main/org/openscience/cdk/silent/Element.java
  A src/main/org/openscience/cdk/silent/FragmentAtom.java
  A src/main/org/openscience/cdk/silent/Isotope.java
  A src/main/org/openscience/cdk/silent/LonePair.java
  A src/main/org/openscience/cdk/silent/Mapping.java
  A src/main/org/openscience/cdk/silent/MolecularFormula.java
  A src/main/org/openscience/cdk/silent/MolecularFormulaSet.java
  A src/main/org/openscience/cdk/silent/Molecule.java
  A src/main/org/openscience/cdk/silent/MoleculeSet.java
  A src/main/org/openscience/cdk/silent/Monomer.java
  A src/main/org/openscience/cdk/silent/PDBAtom.java
  A src/main/org/openscience/cdk/silent/PDBMonomer.java
  A src/main/org/openscience/cdk/silent/PDBPolymer.java
  A src/main/org/openscience/cdk/silent/PDBStructure.java
  A src/main/org/openscience/cdk/silent/Polymer.java
  A src/main/org/openscience/cdk/silent/PseudoAtom.java
  A src/main/org/openscience/cdk/silent/Reaction.java
  A src/main/org/openscience/cdk/silent/ReactionScheme.java
  A src/main/org/openscience/cdk/silent/ReactionSet.java
  A src/main/org/openscience/cdk/silent/Ring.java
  A src/main/org/openscience/cdk/silent/RingSet.java
  A src/main/org/openscience/cdk/silent/SilentChemObjectBuilder.java
  A src/main/org/openscience/cdk/silent/SingleElectron.java
  A src/main/org/openscience/cdk/silent/Strand.java
  A src/test/org/openscience/cdk/coverage/SilentCoverageTest.java
  A src/test/org/openscience/cdk/modulesuites/MsilentTests.java
  A src/test/org/openscience/cdk/silent/AdductFormulaTest.java
  A src/test/org/openscience/cdk/silent/AminoAcidTest.java
  A src/test/org/openscience/cdk/silent/AtomContainerSetTest.java
  A src/test/org/openscience/cdk/silent/AtomContainerTest.java
  A src/test/org/openscience/cdk/silent/AtomParityTest.java
  A src/test/org/openscience/cdk/silent/AtomTest.java
  A src/test/org/openscience/cdk/silent/AtomTypeTest.java
  A src/test/org/openscience/cdk/silent/BioPolymerTest.java
  A src/test/org/openscience/cdk/silent/BondTest.java
  A src/test/org/openscience/cdk/silent/ChemFileTest.java
  A src/test/org/openscience/cdk/silent/ChemModelTest.java
  A src/test/org/openscience/cdk/silent/ChemObjectListener.java
  A src/test/org/openscience/cdk/silent/ChemObjectTest.java
  A src/test/org/openscience/cdk/silent/ChemObjectTestHelper.java
  A src/test/org/openscience/cdk/silent/ChemSequenceTest.java
  A src/test/org/openscience/cdk/silent/CrystalTest.java
  A src/test/org/openscience/cdk/silent/ElectronContainerTest.java
  A src/test/org/openscience/cdk/silent/ElementTest.java
  A src/test/org/openscience/cdk/silent/FragmentAtomTest.java
  A src/test/org/openscience/cdk/silent/IsotopeTest.java
  A src/test/org/openscience/cdk/silent/LonePairTest.java
  A src/test/org/openscience/cdk/silent/MappingTest.java
  A src/test/org/openscience/cdk/silent/MolecularFormulaSetTest.java
  A src/test/org/openscience/cdk/silent/MolecularFormulaTest.java
  A src/test/org/openscience/cdk/silent/MoleculeSetTest.java
  A src/test/org/openscience/cdk/silent/MoleculeTest.java
  A src/test/org/openscience/cdk/silent/MonomerTest.java
  A src/test/org/openscience/cdk/silent/PDBAtomTest.java
  A src/test/org/openscience/cdk/silent/PDBMonomerTest.java
  A src/test/org/openscience/cdk/silent/PDBPolymerTest.java
  A src/test/org/openscience/cdk/silent/PDBStructureTest.java
  A src/test/org/openscience/cdk/silent/PolymerTest.java
  A src/test/org/openscience/cdk/silent/PseudoAtomTest.java
  A src/test/org/openscience/cdk/silent/ReactionSchemeTest.java
  A src/test/org/openscience/cdk/silent/ReactionSetTest.java
  A src/test/org/openscience/cdk/silent/ReactionTest.java
  A src/test/org/openscience/cdk/silent/RingSetTest.java
  A src/test/org/openscience/cdk/silent/RingTest.java
  A src/test/org/openscience/cdk/silent/SilentChemObjectBuilderTest.java
  A src/test/org/openscience/cdk/silent/SingleElectronTest.java
  A src/test/org/openscience/cdk/silent/StrandTest.java

  Log Message:
  -----------
  Implemented the silent module as a nonotify replacement, copied from the data module, with tests copied from test-nonotify.

Signed-off-by: maclean <gil...@gm...>


  Commit: 822189e4da807bbdcd30c2c9db6fc60ec51a8c6a
      https://github.com/cdk/cdk/commit/822189e4da807bbdcd30c2c9db6fc60ec51a8c6a
  Author: Egon Willighagen <eg...@us...>
  Date:   2011-09-16 (Fri, 16 Sep 2011)

  Changed paths:
    M src/main/org/openscience/cdk/silent/AdductFormula.java
  M src/main/org/openscience/cdk/silent/Atom.java
  M src/main/org/openscience/cdk/silent/AtomContainer.java
  M src/main/org/openscience/cdk/silent/AtomContainerSet.java
  M src/main/org/openscience/cdk/silent/AtomType.java
  M src/main/org/openscience/cdk/silent/Bond.java
  M src/main/org/openscience/cdk/silent/ChemFile.java
  M src/main/org/openscience/cdk/silent/ChemModel.java
  M src/main/org/openscience/cdk/silent/ChemObject.java
  M src/main/org/openscience/cdk/silent/ChemSequence.java
  M src/main/org/openscience/cdk/silent/Crystal.java
  M src/main/org/openscience/cdk/silent/ElectronContainer.java
  M src/main/org/openscience/cdk/silent/Element.java
  M src/main/org/openscience/cdk/silent/Isotope.java
  M src/main/org/openscience/cdk/silent/LonePair.java
  M src/main/org/openscience/cdk/silent/MoleculeSet.java
  M src/main/org/openscience/cdk/silent/Monomer.java
  M src/main/org/openscience/cdk/silent/PseudoAtom.java
  M src/main/org/openscience/cdk/silent/Reaction.java
  M src/main/org/openscience/cdk/silent/ReactionSet.java
  M src/main/org/openscience/cdk/silent/SingleElectron.java

  Log Message:
  -----------
  Removed notifyChanged() calls

Signed-off-by: maclean <gil...@gm...>


  Commit: 496f2426e566bd72b80280a8b1b81d37540fd4ab
      https://github.com/cdk/cdk/commit/496f2426e566bd72b80280a8b1b81d37540fd4ab
  Author: Egon Willighagen <eg...@us...>
  Date:   2011-09-16 (Fri, 16 Sep 2011)

  Changed paths:
    M src/main/org/openscience/cdk/silent/AtomContainer.java
  M src/main/org/openscience/cdk/silent/AtomContainerSet.java
  M src/main/org/openscience/cdk/silent/ChemFile.java
  M src/main/org/openscience/cdk/silent/ChemModel.java
  M src/main/org/openscience/cdk/silent/ChemSequence.java
  M src/main/org/openscience/cdk/silent/ReactionSet.java

  Log Message:
  -----------
  Removed add/removeListener() calls

Signed-off-by: maclean <gil...@gm...>


  Commit: 932b63e47c1217247eb291193a37a525d790dc03
      https://github.com/cdk/cdk/commit/932b63e47c1217247eb291193a37a525d790dc03
  Author: Egon Willighagen <eg...@us...>
  Date:   2011-09-16 (Fri, 16 Sep 2011)

  Changed paths:
    M build.xml
  A src/META-INF/silent.cdkdepends
  A src/META-INF/silent.libdepends
  A src/META-INF/test-silent.cdkdepends
  A src/META-INF/test-silent.devellibdepends
  A src/META-INF/test-silent.libdepends
  A src/main/org/openscience/cdk/silent/AdductFormula.java
  A src/main/org/openscience/cdk/silent/AminoAcid.java
  A src/main/org/openscience/cdk/silent/Atom.java
  A src/main/org/openscience/cdk/silent/AtomContainer.java
  A src/main/org/openscience/cdk/silent/AtomContainerSet.java
  A src/main/org/openscience/cdk/silent/AtomParity.java
  A src/main/org/openscience/cdk/silent/AtomType.java
  A src/main/org/openscience/cdk/silent/BioPolymer.java
  A src/main/org/openscience/cdk/silent/Bond.java
  A src/main/org/openscience/cdk/silent/ChemFile.java
  A src/main/org/openscience/cdk/silent/ChemModel.java
  A src/main/org/openscience/cdk/silent/ChemObject.java
  A src/main/org/openscience/cdk/silent/ChemSequence.java
  A src/main/org/openscience/cdk/silent/Crystal.java
  A src/main/org/openscience/cdk/silent/ElectronContainer.java
  A src/main/org/openscience/cdk/silent/Element.java
  A src/main/org/openscience/cdk/silent/FragmentAtom.java
  A src/main/org/openscience/cdk/silent/Isotope.java
  A src/main/org/openscience/cdk/silent/LonePair.java
  A src/main/org/openscience/cdk/silent/Mapping.java
  A src/main/org/openscience/cdk/silent/MolecularFormula.java
  A src/main/org/openscience/cdk/silent/MolecularFormulaSet.java
  A src/main/org/openscience/cdk/silent/Molecule.java
  A src/main/org/openscience/cdk/silent/MoleculeSet.java
  A src/main/org/openscience/cdk/silent/Monomer.java
  A src/main/org/openscience/cdk/silent/PDBAtom.java
  A src/main/org/openscience/cdk/silent/PDBMonomer.java
  A src/main/org/openscience/cdk/silent/PDBPolymer.java
  A src/main/org/openscience/cdk/silent/PDBStructure.java
  A src/main/org/openscience/cdk/silent/Polymer.java
  A src/main/org/openscience/cdk/silent/PseudoAtom.java
  A src/main/org/openscience/cdk/silent/Reaction.java
  A src/main/org/openscience/cdk/silent/ReactionScheme.java
  A src/main/org/openscience/cdk/silent/ReactionSet.java
  A src/main/org/openscience/cdk/silent/Ring.java
  A src/main/org/openscience/cdk/silent/RingSet.java
  A src/main/org/openscience/cdk/silent/SilentChemObjectBuilder.java
  A src/main/org/openscience/cdk/silent/SingleElectron.java
  A src/main/org/openscience/cdk/silent/Strand.java
  A src/test/org/openscience/cdk/coverage/SilentCoverageTest.java
  A src/test/org/openscience/cdk/modulesuites/MsilentTests.java
  A src/test/org/openscience/cdk/silent/AdductFormulaTest.java
  A src/test/org/openscience/cdk/silent/AminoAcidTest.java
  A src/test/org/openscience/cdk/silent/AtomContainerSetTest.java
  A src/test/org/openscience/cdk/silent/AtomContainerTest.java
  A src/test/org/openscience/cdk/silent/AtomParityTest.java
  A src/test/org/openscience/cdk/silent/AtomTest.java
  A src/test/org/openscience/cdk/silent/AtomTypeTest.java
  A src/test/org/openscience/cdk/silent/BioPolymerTest.java
  A src/test/org/openscience/cdk/silent/BondTest.java
  A src/test/org/openscience/cdk/silent/ChemFileTest.java
  A src/test/org/openscience/cdk/silent/ChemModelTest.java
  A src/test/org/openscience/cdk/silent/ChemObjectListener.java
  A src/test/org/openscience/cdk/silent/ChemObjectTest.java
  A src/test/org/openscience/cdk/silent/ChemObjectTestHelper.java
  A src/test/org/openscience/cdk/silent/ChemSequenceTest.java
  A src/test/org/openscience/cdk/silent/CrystalTest.java
  A src/test/org/openscience/cdk/silent/ElectronContainerTest.java
  A src/test/org/openscience/cdk/silent/ElementTest.java
  A src/test/org/openscience/cdk/silent/FragmentAtomTest.java
  A src/test/org/openscience/cdk/silent/IsotopeTest.java
  A src/test/org/openscience/cdk/silent/LonePairTest.java
  A src/test/org/openscience/cdk/silent/MappingTest.java
  A src/test/org/openscience/cdk/silent/MolecularFormulaSetTest.java
  A src/test/org/openscience/cdk/silent/MolecularFormulaTest.java
  A src/test/org/openscience/cdk/silent/MoleculeSetTest.java
  A src/test/org/openscience/cdk/silent/MoleculeTest.java
  A src/test/org/openscience/cdk/silent/MonomerTest.java
  A src/test/org/openscience/cdk/silent/PDBAtomTest.java
  A src/test/org/openscience/cdk/silent/PDBMonomerTest.java
  A src/test/org/openscience/cdk/silent/PDBPolymerTest.java
  A src/test/org/openscience/cdk/silent/PDBStructureTest.java
  A src/test/org/openscience/cdk/silent/PolymerTest.java
  A src/test/org/openscience/cdk/silent/PseudoAtomTest.java
  A src/test/org/openscience/cdk/silent/ReactionSchemeTest.java
  A src/test/org/openscience/cdk/silent/ReactionSetTest.java
  A src/test/org/openscience/cdk/silent/ReactionTest.java
  A src/test/org/openscience/cdk/silent/RingSetTest.java
  A src/test/org/openscience/cdk/silent/RingTest.java
  A src/test/org/openscience/cdk/silent/SilentChemObjectBuilderTest.java
  A src/test/org/openscience/cdk/silent/SingleElectronTest.java
  A src/test/org/openscience/cdk/silent/StrandTest.java

  Log Message:
  -----------
  Merge branch 'cdk-1.4.x'


Compare: https://github.com/cdk/cdk/compare/face5c5...932b63e