[Cdk-jchempaint] Atom/bond-based rendering parameters (was: Rendering issues)

[Egon W. <ego...@gm...>]

On Tue, Oct 26, 2010 at 10:42 AM, Nina Jeliazkova
<jel...@gm...> wrote:
> BTW, is there a way to force hydrogens to show on the ammoinum ion , and
> leaving the rest the same  ?
>
> http://apps.ideaconsult.net:8080/ambit2/depict?search=[NH4%2B].CP%28%3DO%29%28O%29CCC%28N%29C%28%3DO%29[O-]

No, the rendering code currently does not allow atom or bond based
rendering settings... this is where we should go in the end, but the
current design does not allow this yet.

That said, there are 'global' parameters that should get you close: I
would suggest to add implicit hydrogens, and look for the parameters
for when to show carbons... I will try to find a bit of time to write
this up as a CDK-JChemPaint tutorial soon...

Egon

-- 
Dr E.L. Willighagen
Postdoctoral Research Associate
University of Cambridge
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