[Cdk-commits] [cdk/cdk] 4ac711: Updated test to assume new Bond() creates a bond w...

[<no...@gi...>]

Branch: refs/heads/master
Home:   http://github.com/cdk/cdk

Commit: 4ac711194a1e2361e55fff0cc0fd2be6159b9ca8
    http://github.com/cdk/cdk/commit/4ac711194a1e2361e55fff0cc0fd2be6159b9ca8
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-27 (Tue, 27 Jul 2010)

Changed paths:
  M src/test/org/openscience/cdk/BondTest.java

Log Message:
-----------
Updated test to assume new Bond() creates a bond with zero atoms

Signed-off-by: Rajarshi  Guha <raj...@gm...>


Commit: 916ab96c4e128798497e2455c147c73201f01fe1
    http://github.com/cdk/cdk/commit/916ab96c4e128798497e2455c147c73201f01fe1
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-27 (Tue, 27 Jul 2010)

Changed paths:
  M src/main/org/openscience/cdk/Bond.java

Log Message:
-----------
Fixed Bond() constructor to create a bond with zero atoms. Also fixed setAtom(IAtom, int) to increase the atom count if a null entry is filled with a non-null IAtom.

Signed-off-by: Rajarshi  Guha <raj...@gm...>


Commit: 23d96855fa7f33261a2a28fa49e6baa8081e05d3
    http://github.com/cdk/cdk/commit/23d96855fa7f33261a2a28fa49e6baa8081e05d3
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-27 (Tue, 27 Jul 2010)

Changed paths:
  M src/main/org/openscience/cdk/nonotify/NNBond.java
  M src/test/org/openscience/cdk/nonotify/NNBondTest.java

Log Message:
-----------
Also fix the new NNBond() == 0 atoms for the nonotify module

Signed-off-by: Rajarshi  Guha <raj...@gm...>


Commit: 6cf95db428643380076a893ed738ce64bf97a4a3
    http://github.com/cdk/cdk/commit/6cf95db428643380076a893ed738ce64bf97a4a3
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-27 (Tue, 27 Jul 2010)

Changed paths:
  M src/main/org/openscience/cdk/Bond.java
  M src/test/org/openscience/cdk/interfaces/AbstractBondTest.java

Log Message:
-----------
Additional patch to reduce atom count on setAtom(null, int) and unit tests for the setAtom(IAtom, int) behavior.

Signed-off-by: Rajarshi  Guha <raj...@gm...>


Commit: ce9b1bd9b36fd55a3cc2890ac1bae3f646c2f42b
    http://github.com/cdk/cdk/commit/ce9b1bd9b36fd55a3cc2890ac1bae3f646c2f42b
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-27 (Tue, 27 Jul 2010)

Changed paths:
  M src/test/org/openscience/cdk/interfaces/AbstractBondTest.java

Log Message:
-----------
Backport patch, to make the patches compile with cdk-1.2.x

Signed-off-by: Rajarshi  Guha <raj...@gm...>


Commit: 6ef1fb1b36d0c5f8aab89be05039d4c7580178cb
    http://github.com/cdk/cdk/commit/6ef1fb1b36d0c5f8aab89be05039d4c7580178cb
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-28 (Wed, 28 Jul 2010)

Changed paths:
  M src/test/org/openscience/cdk/debug/DebugBondTest.java

Log Message:
-----------
Updated the DebugBond unit test too now: new DebugBond() has zero atoms


Commit: f62ef31c285456c7edb64fc1d71f0fcff5ec6f99
    http://github.com/cdk/cdk/commit/f62ef31c285456c7edb64fc1d71f0fcff5ec6f99
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-28 (Wed, 28 Jul 2010)

Changed paths:
  M build.props

Log Message:
-----------
Release 1.2.6


Commit: d8f64f85193b37f28e03dd23c7a39619996164f3
    http://github.com/cdk/cdk/commit/d8f64f85193b37f28e03dd23c7a39619996164f3
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-29 (Thu, 29 Jul 2010)

Changed paths:
  M src/main/org/openscience/cdk/Bond.java
  M src/main/org/openscience/cdk/aromaticity/CDKHueckelAromaticityDetector.java
  M src/main/org/openscience/cdk/atomtype/CDKAtomTypeMatcher.java
  M src/main/org/openscience/cdk/dict/data/cdk-atom-types.owl
  M src/main/org/openscience/cdk/nonotify/NNBond.java
  M src/test/data/mdl/hisotopes.mol
  M src/test/data/mdl/massnumber.mol
  M src/test/org/openscience/cdk/BondTest.java
  M src/test/org/openscience/cdk/aromaticity/CDKHueckelAromaticityDetectorTest.java
  M src/test/org/openscience/cdk/atomtype/CDKAtomTypeMatcherSMILESTest.java
  M src/test/org/openscience/cdk/atomtype/CDKAtomTypeMatcherTest.java
  A src/test/org/openscience/cdk/atomtype/RepeatedCDKAtomTypeMatcherSMILESTest.java
  M src/test/org/openscience/cdk/debug/DebugBondTest.java
  M src/test/org/openscience/cdk/interfaces/AbstractAtomContainerTest.java
  M src/test/org/openscience/cdk/interfaces/AbstractBondTest.java
  M src/test/org/openscience/cdk/modeling/builder3d/ModelBuilder3DTest.java
  M src/test/org/openscience/cdk/modulesuites/McoreTests.java
  M src/test/org/openscience/cdk/nonotify/NNBondTest.java

Log Message:
-----------
Fixed merged conflicts for mergind cdk-1.2.x


Commit: e383f4bb1d78ccda5df0ee0b262bddff7d9b2be1
    http://github.com/cdk/cdk/commit/e383f4bb1d78ccda5df0ee0b262bddff7d9b2be1
Author: Egon Willighagen <eg...@us...>
Date:   2010-07-29 (Thu, 29 Jul 2010)

Changed paths:
  M src/test/org/openscience/cdk/aromaticity/CDKHueckelAromaticityDetectorTest.java
  M src/test/org/openscience/cdk/interfaces/AbstractAtomContainerTest.java
  M src/test/org/openscience/cdk/interfaces/AbstractBondTest.java

Log Message:
-----------
Updated cdk-1.2.x patches for master API