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[Cdk-commits] SF.net SVN: cdk: [10487] cdk/trunk
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From: <eg...@us...> - 2008-03-22 07:59:59
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Revision: 10487
http://cdk.svn.sourceforge.net/cdk/?rev=10487&view=rev
Author: egonw
Date: 2008-03-22 00:59:57 -0700 (Sat, 22 Mar 2008)
Log Message:
-----------
Removed more obsolete stuff
Removed Paths:
-------------
cdk/trunk/EditorApplet.html
cdk/trunk/ViewerApplet.html
cdk/trunk/ViewerAppletSmall.html
cdk/trunk/applet/
cdk/trunk/build-applet.xml
cdk/trunk/changelog-jcp.xml
Deleted: cdk/trunk/EditorApplet.html
===================================================================
--- cdk/trunk/EditorApplet.html 2008-03-22 07:22:38 UTC (rev 10486)
+++ cdk/trunk/EditorApplet.html 2008-03-22 07:59:57 UTC (rev 10487)
@@ -1,29 +0,0 @@
-<html>
-<head>
-<title>The JChemPaint Applet Demo</title>
-</head>
-<body BGCOLOR="#ffffff" LINK="#000099">
-
-<h2>
-The JChemPaint Applet
-</h2>
-
-<applet code="org.openscience.cdk.applications.jchempaint.applet.JChemPaintEditorApplet" archive="dist/jar/jchempaint-applet-core.jar"
- name="Editor"
- width="600" height="500">
-<param name="load" value="src/data/mdl/withcharges.mol">
-<param name="impliciths" value="true">
-</applet>
-<a href="javascript:alert(document.Editor.getMolFile())">show mol file</a>
-<a href="javascript:alert(document.Editor.getSmiles())">show smiles</a>
-<a href="javascript:alert(document.Editor.getSmilesChiral())">show stereo smiles</a>
-<a href="javascript:document.Editor.clear()">clear</a>
-<a href="javascript:document.Editor.addMolFileWithReplace('\n CDK 1/19/07,10:3\n\n 2 1 0 0 0 0 0 0 0 0999 V2000 \n 252.0000 1022.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 227.0000 1047.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 2 1 1 0 0 0 0 \nM END')">insert CC</a>
-<blockquote>
-<hr>
-
-</body>
-</html>
-
-
-
Deleted: cdk/trunk/ViewerApplet.html
===================================================================
--- cdk/trunk/ViewerApplet.html 2008-03-22 07:22:38 UTC (rev 10486)
+++ cdk/trunk/ViewerApplet.html 2008-03-22 07:59:57 UTC (rev 10487)
@@ -1,28 +0,0 @@
-<html>
-<head>
-<title>The JChemPaint Applet Demo</title>
-</head>
-<body BGCOLOR="#ffffff" LINK="#000099">
-
-<h2>
-The JChemPaint Applet
-</h2>
-
-<applet name="Viewer" code="org.openscience.cdk.applications.jchempaint.applet.JChemPaintViewerOnlyApplet" archive="dist/jar/jchempaint-applet-core.jar"
- width="600" height="500">
-<param name="load" value="src/data/mdl/big.mol">
-<param name="atomNumbersVisible" value="true">
-<param name="background" value="12632256">
-<param name="detachable" value="true">
-<param name="tooltips" value="30|test1|31|test2">
-</applet>
-<a href="javascript:document.Viewer.selectAtom(6)">select atom 6</a>
-<a href="javascript:alert(document.Viewer.getMolFile())">show mol file</a>
-<blockquote>
-<hr>
-
-</body>
-</html>
-
-
-
Deleted: cdk/trunk/ViewerAppletSmall.html
===================================================================
--- cdk/trunk/ViewerAppletSmall.html 2008-03-22 07:22:38 UTC (rev 10486)
+++ cdk/trunk/ViewerAppletSmall.html 2008-03-22 07:59:57 UTC (rev 10487)
@@ -1,27 +0,0 @@
-<html>
-<head>
-<title>The JChemPaint Applet Demo</title>
-</head>
-<body BGCOLOR="#ffffff" LINK="#000099">
-
-<h2>
-The JChemPaint Applet (as a compact viewer)
-</h2>
-
- <applet name="Viewer1"
- code="org.openscience.cdk.applications.jchempaint.applet.JChemPaintViewerOnlyApplet"
- archive="dist/jar/jchempaint-applet-core.jar"
- width="250" height="150">
- <param name="load" value="src/data/mdl/a-pinene.mol">
- <param name="compact" value="true">
- </applet>
-
-<a href="javascript:document.Viewer.selectAtom(6)">select atom 6</a>
-<a href="javascript:alert(document.Viewer.getMolFile())">show mol file</a>
-<blockquote>
-<hr>
-</body>
-</html>
-
-
-
Deleted: cdk/trunk/build-applet.xml
===================================================================
--- cdk/trunk/build-applet.xml 2008-03-22 07:22:38 UTC (rev 10486)
+++ cdk/trunk/build-applet.xml 2008-03-22 07:59:57 UTC (rev 10487)
@@ -1,125 +0,0 @@
-<project name="JCPAppletCDK" default="jcp-only-applet" basedir=".">
- <import file="build-jchempaint.xml" />
- <property name="growing_list_file" value="${build}/applet-classes-list.files"/>
- <property name="growing_classpath" value="${build}/applet-jars-list.files"/>
- <target id="jcp-only-applet" name="jcp-only-applet" depends="jcp-only, build-applet" description="Builds the JChemPaint applet jar files with jarindex" />
- <target id="dist-applet" name="dist-applet" depends="dist-jcp, build-applet" description="Builds the JChemPaint applet jar files with jarindex" />
- <target id="build-applet" name="build-applet" description="Builds the JChemPaint applet jar files with jarindex">
- <!-- At first jars are packed from file lists -->
- <!-- The file lists are generated from tomcat access log files with unpacked class files (and without jar files) -->
- <!-- cat apache/jakarta-tomcat-5.0.28/logs/localhost_access_log.2005-04-27.txt | awk -v classdir="/jcpapplet/classes/" '$9 != 404 && substr($7,0,length(classdir)) == classdir { print substr($7,length(classdir)+1) }' | sort -->
- <!-- hint: uncomment <Valve className="org.apache.catalina.valves.AccessLogValve" in conf/server.xml to switch on tomcat's access logging -->
- <concat destfile="${growing_list_file}" fixlastline="yes" append="no">org/apache/log4j/**${line.separator}</concat>
- <concat destfile="${growing_list_file}" fixlastline="yes" append="yes">
- <fileset file="${metainf}/applet-core.files"/>
- </concat>
- <concat destfile="${growing_classpath}" fixlastline="no" append="no">${dist}/jar/jchempaint-applet-core.jar${line.separator}</concat>
- <macrodef name="jar-from-list">
- <attribute name="destfile"/>
- <attribute name="includesfile"/>
- <sequential>
- <jar destfile="@{destfile}">
- <fileset dir="${appjars.dir}">
- <includesfile name="@{includesfile}"/>
- <excludesfile name="${growing_list_file}"/>
- </fileset>
- </jar>
- <concat destfile="${growing_list_file}" fixlastline="yes" append="yes">
- <fileset file="@{includesfile}" />
- </concat>
- <concat destfile="${growing_classpath}" fixlastline="no" append="yes">@{destfile}${line.separator}</concat>
- </sequential>
- </macrodef>
- <macrodef name="jar-from-pattern">
- <attribute name="destfile"/>
- <attribute name="includepattern"/>
- <sequential>
- <jar destfile="@{destfile}">
- <fileset dir="${appjars.dir}">
- <include name="@{includepattern}"/>
- <excludesfile name="${growing_list_file}"/>
- </fileset>
- </jar>
- <concat destfile="${growing_list_file}" fixlastline="yes" append="yes">@{includepattern}${line.separator}</concat>
- <concat destfile="${growing_classpath}" fixlastline="no" append="yes">@{destfile}${line.separator}</concat>
- </sequential>
- </macrodef>
-
- <!--<echo message="Compiling applet logging tool org/openscience/cdk/tools/LoggingTool.java to ${appjars.dir}"/>
- <delete file="${appjars.dir}/org/openscience/cdk/tools/LoggingTool.class"/>
- <javac srcdir="applet" destdir="${appjars.dir}" optimize="${optimization}" debug="${debug}" deprecation="${deprecation}" target="1.3" source="1.3">
- </javac>-->
-
- <jar-from-list destfile="${dist}/jar/jchempaint-applet-viewer-opts.jar" includesfile="${metainf}/applet-viewer-opts.files"/>
- <jar-from-list destfile="${dist}/jar/jchempaint-applet-editor.jar" includesfile="${metainf}/applet-editor.files"/>
- <jar-from-list destfile="${dist}/jar/jchempaint-applet-editor-opts.jar" includesfile="${metainf}/applet-editor-opts.files"/>
- <jar-from-list destfile="${dist}/jar/jchempaint-applet-resources.jar" includesfile="${metainf}/jchempaint.application.datafiles"/>
- <!-- the following jar files are packed from directory patterns -->
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_applications_jchempaint.jar" includepattern="org/openscience/cdk/applications/jchempaint/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_applications.jar" includepattern="org/openscience/cdk/applications/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_config.jar" includepattern="org/openscience/cdk/config/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_dict.jar" includepattern="org/openscience/cdk/dict/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_io.jar" includepattern="org/openscience/cdk/io/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_qsar.jar" includepattern="org/openscience/cdk/qsar/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_iupac.jar" includepattern="org/openscience/cdk/iupac/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_math.jar" includepattern="org/openscience/cdk/math/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_tools.jar" includepattern="org/openscience/cdk/tools/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_structgen.jar" includepattern="org/openscience/cdk/structgen/**"
-/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk_nonotify.jar" includepattern="org/openscience/cdk/nonotify/**"
-/>
-
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience_cdk.jar" includepattern="org/openscience/cdk/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_openscience.jar" includepattern="org/openscience/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_3pq.jar" includepattern="org/_3pq/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_apache.jar" includepattern="org/apache/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_omegahat.jar" includepattern="org/omegahat/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_w3c.jar" includepattern="org/w3c/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org_xmlcml.jar" includepattern="org/xmlcml/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-org.jar" includepattern="org/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-com_ozten.jar" includepattern="com/ozten/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-Jama.jar" includepattern="Jama/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-jas.jar" includepattern="jas/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-javax_media.jar" includepattern="javax/media/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-javax_vecmath.jar" includepattern="javax/vecmath/**"/>
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-nu.jar" includepattern="nu/**"/>
- <!-- the following jar contains all other classes and resources -->
- <jar-from-pattern destfile="${dist}/jar/jchempaint-applet-others.jar" includepattern="**/*"/>
- <!-- the main jar file is packed from a list, but it must be packed as last file because it contains INDEX.LIST -->
- <jar destfile="${dist}/jar/jchempaint-applet-core.jar" index="true">
- <manifest>
- <section name="org/openscience/cdk/applications/jchempaint/">
- <attribute name="Specification-Title" value="JChemPaint"/>
- <attribute name="Specification-Version" value="1.0"/>
- <attribute name="Specification-Vendor" value="The CDK Project"/>
- <attribute name="Implementation-Title" value="org.openscience.cdk"/>
- <attribute name="Implementation-Version" value="${jcp.version}"/>
- <attribute name="Implementation-Vendor" value="The CDK Project"/>
- </section>
- </manifest>
- <fileset dir="${appjars.dir}">
- <includesfile name="${metainf}/applet-core.files"/>
- <exclude name="org/apache/log4j/**"/>
- </fileset>
- <indexjars>
- <fileset dir=".">
- <includesfile name="${growing_classpath}"/>
- </fileset>
- </indexjars>
- </jar>
- </target>
- <target id="clean-applet" name="clean-applet" description="Removes applet files.">
- <delete>
- <fileset dir="${dist}/jar/" includes="jchempaint-applet-*.jar" />
- <fileset file="${growing_list_file}"/>
- <fileset file="${growing_classpath}"/>
- </delete>
- </target>
-</project>
Deleted: cdk/trunk/changelog-jcp.xml
===================================================================
--- cdk/trunk/changelog-jcp.xml 2008-03-22 07:22:38 UTC (rev 10486)
+++ cdk/trunk/changelog-jcp.xml 2008-03-22 07:59:57 UTC (rev 10487)
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<changelog xmlns="http://cdk.sf.net/schema/changelog"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://cdk.sf.net/schema/changelog changelog.xsd">
-
- <release id="next">
- <addition contributor="shk3">
- Added a function to enter functional groups directly
- </addition>
- </release>
- <release id="2.3.1">
- <addition contributor="shk3">
- Changed the system for handling Hs. JCP now traces implicit Hs by default and shows them along element symbols. This means you get OH, CH3 etc, which was often asked for.
- </addition>
- </release>
-</changelog>
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