[Cdk-commits] CVS: cdk-taverna README,1.1.1.1,1.2

[Egon W. <eg...@us...>]

Update of /cvsroot/cdk/cdk-taverna
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv9420

Modified Files:
	README 
Log Message:
Added docs on how to get Taverna CDK aware

Index: README
===================================================================
RCS file: /cvsroot/cdk/cdk-taverna/README,v
retrieving revision 1.1.1.1
retrieving revision 1.2
diff -u -r1.1.1.1 -r1.2
--- README	31 Mar 2005 14:28:00 -0000	1.1.1.1
+++ README	31 Mar 2005 19:01:13 -0000	1.2
@@ -1,2 +1,42 @@
 This project deals with embedding CDK in Taverna (taverna.sf.net) in order to get
 a chemoinformatics workbench.
+
+This is how to get it going:
+
+1. download Taverna (FIXME: add details)
+2. checkout the cdk-taverna module:
+
+  > cvs -d:ext:US...@cv...:/cvsroot/cdk co cdk-taverna
+
+3. do something like
+
+  > cd taverna1.0-dist/src/org
+  > ln -s ../../../cdk-taverna/src/org/openscience
+
+4. compile CDK with 'ant clean dist-large' and copy the cdk-SOMETHING.jar
+   into taverna1.0-dist/lib/cdk-large.jar
+
+5. edit taverna1.0-dist/workbenchlibs.text and add cdk-large.jar
+
+6. edit taverna1.0-dist/src/META-INF/services/org.embl.ebi.escience.scuflworkers.java.LocalWorker
+   and add the CDK processing units. E.g. the following line:
+   
+  org.openscience.cdk.applications.taverna.ParseSmiles = chemoinformatics:Convert Smiles to Connection Tables
+  
+  Where chemoinformatics is the new category (FIXME: subcats possible?)
+  
+7. compile taverna with:
+
+  > cd taverna1.0-dist
+  > ant fetchjars
+  > ant
+  
+8. run Taverna with:
+
+  > cd taverna1.0-dist/build/taverna-workbench-1.0
+  > export JAVA_HOME=/your/favorite
+  > sh runme.sh
+  
+9. start reading the Taverna tutorial
+
+