bionanny-users Mailing List for Bionanny
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From: Martin S. <se...@eb...> - 2006-05-15 12:58:13
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Dear users, Last week, Sourceforge announced a change in their CVS repositories. You need to CVS checkout again (or, if using Eclipse, to change the host from cvs.sourceforge.net to bionanny.cvs.sourceforge.net). This is what SourceForge suggests: Summary of changes, effective 2006-05-12: ----------------------------------------- 1. Hostname for CVS service Old: cvs.sourceforge.net New: bionanny.cvs.sourceforge.net cvs -d:pserver:ano...@cv...:/cvsroot/bionanny co bionanny would be changed to cvs -d:pserver:ano...@bi...:/cvsroot/bionanny co bionanny (and similarly for the ssh access) With regards, Martin -- Martin Senger email: mar...@gm... skype: martinsenger |
From: Martin S. <se...@eb...> - 2005-06-15 18:44:08
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Hi Frank, Congratulation! - You have just sent the first email into this mailing list; and you have just made the first download. Well - it answers your question how widely it is used :-) Not much, just started. But I hope that it will be used. I surely plan to deploy it on my services - and let it publicly visible. I hope to do it during a week, or so, on the EBI's Soaplab-based services. The BioMoby services are written a lot in Perl - and that makes it a bit tricky for BioNanny because the current version of SOAP::Lite does not have the same (transparent) support for monitoring calls as Apache Axis has. But it is planned (according to the SOAP::Lite documentation), so we will see. Your idea to make monitored results available as a BioMoby service is interesting, I will look at it... You are also right that the various metadata make the monitoring interesting. Once I see growing interest I surely dedicate more time to improve the support for metadata monitoring. It is now a bit under-developed. I will let you know when I deploy BioNanny on top of the EBI's services. Youremail motivated me to do it rather sooner than later :-) With regards, Martin PS. We may have also more discussing users after I give my short talk at BOSC 2005 in Detroit mext week. M. -- Martin Senger EMBL Outstation - Hinxton Senger@EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger |
From: Frank G. <fgi...@hm...> - 2005-06-15 18:09:50
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Hi Martin, I just CVS-check'ed out the BioNanny. I remember you discussed this idea last year at the MOBY developers' meeting in Cold Spring Harbor, and I'm glad that it's a reality. It looks great. I built the code without difficulty, but it's not clear to me whether I can use it to find metadata on other people's services, or only on my own. I guess, in principle, we should be concerned about how our own services are performing, how many users they're attracting, how much of our valuable resources they're consuming etc. But in real life, I don't want to know so much about MY services, I want to know about YOURS! Is bionanny available as a BioMOBY (or other) web service, that I can call and find out about other services? Can you give any idea about how widely it's deployed (I know it's only a few months old)? This looks like a really useful tool! -Frank Gibbons PhD, Computational Biologist, Harvard Medical School BCMP/SGM-322, 250 Longwood Ave, Boston MA 02115, USA. Tel: 617-432-3555 Fax: 617-432-3557 http://llama.med.harvard.edu/~fgibbons |