Re: [Biomodels-net-support] MatLab or table or list format

[Camille L. <la...@eb...>]

Dear Cindy,

> I want to download a model from the BioModels database (which is GREAT
> by the way!), and want to run it in MatLab.  I don't see an option to
> convert it to MatLab format. If there is one, can you point me to it?
> If not, do you know if Octave is the closest?

There is a m-file export available under: Other formats (auto-generated) 
 > Octave (m-file).
This file should work in both MatLab and Octave (as those software share 
the same file format).
Please do contact us if you experience any difficulties using those files.


>  Another alternative is to
> download it in a list or table (say, a tab-delimited file) format lists
> out all the various sections (Reactions with Rates, Rules, Parameters,
> Compartments, etc.) as I can then convert that myself.  Is there a way
> to download such an organized list or table that I'm not noticing?

Unfortunately, there is currently no such feature. If you think that 
would be a much needed addition to BioModels Database, please let us know.


Best regards.

-- 
Camille Laibe
BioModels.net Coordinator
European Bioinformatics Institute, Cambridge (UK)