Re: [Bio-bwa-help] question about GRCh38 decoy

[Heng Li <lh...@me...>]

You should use the new release 0.7.12. The decoy sequence names have been changed.

Heng

On Jan 5, 2015, at 12:32, Zhang, Zhenyu [BSD] - HGD <zz...@bs...> wrote:

> Hi Dr. Li,
> 
> Thank you for building the new decoy d6 sequence with GRCh38.  I have checked the decoy sequences d6, and they looks like:
>> decoy30308
>> 247_1301641196:1613083771_2016_0_2016_F
>> decoy30309 142_203865404:1354296682_2011_0_2011_F
>> decoy30310 181_1357288030:1033953800_2009_0_2009_R
>> decoy30311 gbk_AC240239.3_36758_16564_18570_R
>> decoy30312 043_1544346781:637662444_2003_0_2003_R
>> decoy30313 040_2066170256:959401755_2001_0_2001_R
> 
> while “gbk_AC240239.3_36758_16564_18570_R” looks like gene bank AC240239.3, and the later fields are likely length, location, strand, etc.  I am not sure what are "247_1301641196:1613083771” or "142_203865404:1354296682” mean.  It looks like a three digit id followed by ranges. My question is “Are these ids internal id you used to build the decoy and how could I recover which sequences they were generated from? “  Thanks.
> 
> Best,
> Zhenyu
> 
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> 
> Thank you.