Re: [Bio-bwa-help] Generate one sam/bam file for every chromosome

[Rick T. <ta...@we...>]

Use SAMtools view.
http://samtools.sourceforge.net/

On 24/03/2011, at 11:57 AM, YONG-ZHUANG LIU wrote:

> Hi all,
>
> Now I have a whole sequenced genome (a folder containing many fastq  
> format files), I want to use BWA to align these reads to the  
> reference genome. I hope every chromosome have a corresponding sam/ 
> bam file in final results that is like the data of 1000 genomes  
> project. However, I can only get a sam/bam file now containing the  
> data of all chromosomes now. Could you give me some help?
>
>
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Rick Tankard
Research Technician
Bahlo Lab, Bioinformatics
Walter and Eliza Hall Institute

(03) 9345 2629
ta...@we...


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