Re: [Apbs-users] charge density plot

[L. M. Espinoza-F. <me...@dd...>]

Thanks for the suggestions. However, I really don't know from where to
start... Could you give me some guidance, please?

Again, thanks.

Michel

2006/3/18, Nathan Baker <nat...@wu...>:
> The best way to do that is to modify the code in tools/mesh/value.c or
> tools/python/vgrid to extract values from a charge density OpenDX map.
>  Of these two options, the Python code in tools/python/vgrid is
> probably the easiest...
>
> Thanks,
>
> Nathan
>
> On 3/16/06, L. Michel Espinoza-Fonseca <me...@dd...> wrote:
> > Dear all,
> >
> > I'm computing the charge density around a protein using APBS. I got a
> > very homogeneous charge surfaces, which is what I want to demonstrate.
> > However, I would like to know if it is possible to get a x-y plot of
> > density vs distance (let's say, starting from a cutoff of 3.5-4 A),
> > which will make my analysis get closer to more quantitative approach.
> >
> > Thanks a lot!
> > Michel
> >
> >
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> --
> Assistant Professor, Dept. of Biochemistry and Molecular Biophysics
> Center for Computational Biology, Washington University in St. Louis
> Web: http://cholla.wustl.edu/
>