From: <vin...@dr...> - 2005-08-30 02:55:42
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Hey all -- I'm having APBS output the laplacian map (the 'write lap') command. Without the 'write lap' command, the calculations proceed without any error. However, as soon as I include the command, the program dies with the followint error message: VASSERT: ASSERTION FAILURE! filename vpmg.c, line 799, (Vgrid_curvature(grid,position, 1, &(vec[(((k)*(nx)*(ny))+((j)*(nx))+(i))]))) Thanks all, Vince My infile is: # READ IN MOLECULES read mol pqr ion.pqr end # COMPUTE POTENTIAL FOR SOLVATED STATE elec name solvated mg-auto dime 33 33 33 cglen 50 50 50 fglen 24 24 24 fgcent mol 1 cgcent mol 1 mol 1 npbe bcfl mdh pdie 1.0 sdie 78.54 chgm spl2 srfm mol srad 1.4 swin 0.3 temp 298.15 gamma 0.105 calcenergy total calcforce no write pot dx pot_apbs00 # write lap dx lap_apbs00 end # COMPUTE POTENTIAL FOR REFERENCE STATE elec name reference mg-auto dime 33 33 33 cglen 50 50 50 fglen 24 24 24 fgcent mol 1 cgcent mol 1 mol 1 npbe bcfl mdh pdie 1.0 sdie 1.0 chgm spl2 srfm mol srad 1.4 swin 0.3 temp 298.15 gamma 0.105 calcenergy total calcforce no end # COMBINE TO GIVE SOLVATION ENERGY print energy solvated - reference end quit |