[apbs-users] Error when installing APBS from Git source code

[Xingcheng L. <xl...@ri...>]

Hi,

When installing APBS from Git repository following instruction on
https://github.com/Electrostatics/apbs-pdb2pqr/blob/1.4.1-binary-release/apbs/BUILD.md

I met with error like this:

[ 10%] Completed 'maloc'
[ 10%] Built target maloc
Scanning dependencies of target apbs_fem
[ 11%] Building C object src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o
In file included from
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:57:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:69:19:
error: mc/mc.h: No such file or directory
In file included from
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:57:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:79: error:
expected ‘)’ before ‘*’ token
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:94: error:
expected specifier-qualifier-list before ‘Gem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:186: error:
expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:238: error:
expected declaration specifiers or ‘...’ before ‘Gem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:252: error:
expected declaration specifiers or ‘...’ before ‘Gem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.h:289: error:
expected declaration specifiers or ‘...’ before ‘SS’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_getNumberAtoms’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:72: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:73: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_getAtom’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:81: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:83: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:84: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_getAtomIndex’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:92: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:94: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:95: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_getNumberSimplices’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:103: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:105: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: At top
level:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:109: error:
expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_getSimplexIndex’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:123: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:125: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_memChk’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:131: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: At top
level:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:136: error:
expected declaration specifiers or ‘...’ before ‘Gem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_ctor’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:142: error:
‘gm’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:142: error:
(Each undeclared identifier is reported only once
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:142: error:
for each function it appears in.)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:142: error:
too many arguments to function ‘Vcsm_ctor2’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: At top
level:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:147: error:
expected declaration specifiers or ‘...’ before ‘Gem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_ctor2’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:152: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:160: error:
‘gm’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:164: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:166: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_init’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:182: error:
‘SS’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:182: error:
‘simplex’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:189: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:193: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:193:
warning: implicit declaration of function ‘Gem_numSS’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:193: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:194: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:195: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:202: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:202: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:202: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:203: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:204: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:204: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:204: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:205: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:206: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:206: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:213: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:214:
warning: implicit declaration of function ‘Gem_SS’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:214: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:215:
warning: implicit declaration of function ‘Gem_pointInSimplex’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:215: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:216: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:224: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:225: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:226: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:226: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:226: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:228: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:233: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:235: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:240: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:242: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:248: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:248: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:251: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:251: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:252: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:253: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:253: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:254: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:255: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:258: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:259: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:260: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:261: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:267: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:275: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:275: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:275: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:277: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:278: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:281: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:282: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:283: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:284: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:284: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:285: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:289: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_dtor2’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:303: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:305: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:306: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:306: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:306: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:307: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:310: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:310: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:310: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:311: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:313: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:313: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:314: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:315: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:315: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:316: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:317: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:318: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:319: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:320: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:323: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: At top
level:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:326: error:
expected declaration specifiers or ‘...’ before ‘SS’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c: In function
‘Vcsm_update’:
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:333: error:
‘SS’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:333: error:
‘simplex’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:342: error:
‘Vcsm’ has no member named ‘initFlag’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:346: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:349: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:351: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:351: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:351: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:352: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:353: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:354: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:354: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:354: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:355: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:356: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:357: error:
‘Vcsm’ has no member named ‘msimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:361: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:361: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:362: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:365: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:365: error:
‘Vcsm’ has no member named ‘nsimp’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:369:
warning: implicit declaration of function ‘SS_id’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:369: error:
‘simps’ undeclared (first use in this function)
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:370: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:372: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:380: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:381: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:383: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:385: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:402: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:423: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:441: error:
‘Vcsm’ has no member named ‘gm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:451: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:452: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:458: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:460: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:462: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:477: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:478: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:501: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:504: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:507: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:517: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:517: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:518: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:519: error:
‘Vcsm’ has no member named ‘qsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:520: error:
‘Vcsm’ has no member named ‘nqsm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:524: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:524: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:524: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:525: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:526: error:
‘Vcsm’ has no member named ‘sqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:527: error:
‘Vcsm’ has no member named ‘nsqm’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:530: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:531: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:532: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:533: error:
‘Vcsm’ has no member named ‘vmem’
/home/xl23/Downloads/git/apbs/apbs-pdb2pqr/apbs/src/fem/vcsm.c:534: error:
‘Vcsm’ has no member named ‘vmem’
gmake[2]: *** [src/fem/CMakeFiles/apbs_fem.dir/vcsm.c.o] Error 1
gmake[1]: *** [src/fem/CMakeFiles/apbs_fem.dir/all] Error 2
gmake: *** [all] Error 2

Could anyone help me?

Thank you,


-- 
Xingcheng Lin
Graduate Student
Department of Physics and Astronomy
Center for Theoretical Biological Physics
Rice University