Re: [apbs-users] Error on APBS

[Nathan B. <nat...@gm...>]

Hello --

I would recommend moving APBS to a directory with no spaces in the path
name and to ensure that your input/PQR files are also in a directory with
no spaces in the path name.  This may solve the problem.

Thanks,

Nathan

On Sun, Feb 5, 2012 at 1:18 PM, Hyunjin Kim <hyu...@an...> wrote:

> Hi,
>
> I can attach my pqr file, which is only input file.
> There is space between Program and Files. However, it seems OK, though.
> Because I setup the path for the working directory using "Browse", which
> has space, but it looks OK. What do you think?
>
> Thanks.
>
> Hyunjin.
>
>
> > Hello --
> >
> > Do you have the input files that were used with APBS from either of these
> > programs?  Does your "Programfiles" path really have no space in it?
> >
> > Thanks,
> >
> > Nathan
> >
> > On Sun, Feb 5, 2012 at 11:22 AM, Hyunjin Kim
> > <hyu...@an...>wrote:
> >
> >> Hi,
> >>
> >> Thanks for quick reply.
> >> This error occurred when I used both of PyMol and VMD.
> >> For example, I load file.pqr in VMD and go "Extensions" and "Analysis"
> >> and
> >> choose  "APBS electrostatics". I check Elec values and choose run job
> >> locally and press "Run APBS". Then, APBSRun Error appears as follows:
> >> "APBSRun: output files missing or unreadable".
> >>
> >> I have "APBS.exe" in C:/Programfiles/APBS.
> >> If I click "Edit", then it shows proper path for "APBS.exe", though.
> >> This is what I have done so far.
> >>
> >> Thanks.
> >>
> >> Hyunjin.
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> > Hello --
> >> >
> >> > It sounds like you might be using APBS through PyMOL -- is this
> >> correct?
> >> > Please provide more details about how you are running the software.
> >> Most
> >> > of the time, this error is not due to APBS but instead some aspects of
> >> > software configuration or setup.
> >> >
> >> > Thanks,
> >> >
> >> > Nathan
> >> >
> >> >
> >> > On Sun, Feb 5, 2012 at 7:09 AM, Hyunjin Kim <hyu...@an...>
> >> > wrote:
> >> >
> >> >> Dear,
> >> >>
> >> >> When I used APBS, it calculated the electrostatic potential, but did
> >> not
> >> >> create outputfile.
> >> >> This occurred an error, "outputfile is missing or unreadable".
> >> >> I saw that other person asked about this and you answered that you
> >> fixed
> >> >> the error around at Dec. 2011.
> >> >> However, I wonder whether the version that I downloaded 2 or 3 days
> >> back
> >> >> is still older one with the problem.
> >> >>
> >> >> Thanks.
> >> >>
> >> >> Hyunjin.
> >> >>
> >> >>
> >> >>
> >> >
> >>
> >>
> >>
> >
>