[Apbs-users] Surface plot for DPC (lipids) using APBS

[Arun P. S. <aw...@wa...>]

Hi,

   I tried to use APBS for getting a surface diagram for DPC (Dodecyl phosphocholine) micelles. For some reason, the program did not run. I have also tried to use the pdb2pqr web interface to create the APBS input file for DPC, it did not run or it gave some error with the heavy atoms. Does anyone know what could be the problem or have anyone created the surface plot for DPC before? 

       I also have problems in terms of installation of APBS in my mac OS X (10.4) system. I have actually put the apbs-1.1.0 directory into my /Applications directory. But, I do not see the APBS plugin in my pymol. Any kind of help for solving these two problems would be appreciated.

Thank you,

Arun