A quality control analysis tool for high throughput sequencing data
Crystal ORM using ActiveRecord pattern with flexible query DSL
convert genome coordinates betweeen assemblies
An intuitive and efficient tool for preprocessing Illumina FASTQ reads
MiRDeep*
A de novo local assembler for paired reads
a A suite designed to study mRNAs, miRNAs and circRNAs
Use Apache Pig to process your large sequencing datasets!
Reference based genome assembly and annotation for new genome
Compression for SAM/BAM file format
Supervised Ranking of Contigs in de novo Assemblies
Graphical environment for exploratory ChIPSeq data analysis
High-Quality methylation maps and SNV calling from BS-Seq experiments
miRNA alignment quantitation based on miRBase annotations
A set of tools for working with high-throughput sequencing data
Bycom can do methylcytosine calling (5mC calling) from BS-seq.
Generation of EJCCM files from SAM/BAM files
SOAPindel2 focusing on calling indels from the next-generation p
A HMM-based algorithm for defining enriched regions from ChIP-seq data
AlignmentQC helps analyze the quality of SAM/BAM files.
A lightweight OpenGL SAM/BAM viewer