Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.
The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF.
For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054
Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. The command line tools of Hadoop-BAM should be understandable to all users, but they are limited in scope.
See the SeqPig project for a higher-level interface to the file formats supported by Hadoop-BAM: http://seqpig.sourceforge.net
See Seal for Hadoop-based read alignment tools, Seal: http://biodoop-seal.sourceforge.net
Hadoop Online Training by 123trainings.com by realtime expert. Best Hadoop Online Training in Ameerpet Hyderabad India. Hadoop Online Training Demo Class on 13/09/2013 @ 9.00 PM IST 1. Please join my meeting. 2. Use your microphone and speakers (VoIP) - a headset is recommended. Or, call in using your telephone. United States: +1 (213) 493-0603 Access Code: 672-285-413 Audio PIN: Shown after joining the meeting Meeting ID:672-285-413 GoToMeeting Online-Meetings made easy Contact: +91 9849966077, +91 9700010111, +91 9052820000 Regular batches starts every week please contact us ASAP